Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SIX2Q9NPC8 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SIX2Q9NPC8 CDV3-207ENST00000508481 661 ntTSL 3 BASIC18.84■□□□□ 0.61
SIX2Q9NPC8 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC18.84■□□□□ 0.61
SIX2Q9NPC8 BNIP3P18-201ENST00000593976 575 ntBASIC18.84■□□□□ 0.61
SIX2Q9NPC8 NPAP1P7-201ENST00000613027 823 ntBASIC18.84■□□□□ 0.61
SIX2Q9NPC8 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC18.84■□□□□ 0.61
SIX2Q9NPC8 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SIX2Q9NPC8 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SIX2Q9NPC8 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SIX2Q9NPC8 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SIX2Q9NPC8 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
SIX2Q9NPC8 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
SIX2Q9NPC8 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.61
SIX2Q9NPC8 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC18.83■□□□□ 0.61
SIX2Q9NPC8 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
SIX2Q9NPC8 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC18.83■□□□□ 0.61
SIX2Q9NPC8 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC18.83■□□□□ 0.61
SIX2Q9NPC8 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
SIX2Q9NPC8 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
SIX2Q9NPC8 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SIX2Q9NPC8 COPS8-203ENST00000409334 794 ntTSL 5 BASIC18.83■□□□□ 0.6
SIX2Q9NPC8 IGHV3-47-201ENST00000425060 335 ntBASIC18.83■□□□□ 0.6
SIX2Q9NPC8 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC18.83■□□□□ 0.6
SIX2Q9NPC8 TOB2P1-201ENST00000469761 992 ntBASIC18.83■□□□□ 0.6
SIX2Q9NPC8 KRT18P35-201ENST00000510488 1269 ntBASIC18.83■□□□□ 0.6
SIX2Q9NPC8 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC18.83■□□□□ 0.6
SIX2Q9NPC8 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC18.83■□□□□ 0.6
SIX2Q9NPC8 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
SIX2Q9NPC8 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC18.83■□□□□ 0.6
SIX2Q9NPC8 DBP-204ENST00000599385 709 ntTSL 3 BASIC18.83■□□□□ 0.6
SIX2Q9NPC8 AL358472.4-201ENST00000633140 710 ntBASIC18.83■□□□□ 0.6
SIX2Q9NPC8 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC18.83■□□□□ 0.6
SIX2Q9NPC8 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SIX2Q9NPC8 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SIX2Q9NPC8 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC18.83■□□□□ 0.6
SIX2Q9NPC8 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
SIX2Q9NPC8 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
SIX2Q9NPC8 TP73-AS1-210ENST00000637775 1455 ntBASIC18.83■□□□□ 0.6
SIX2Q9NPC8 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
SIX2Q9NPC8 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
SIX2Q9NPC8 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC18.83■□□□□ 0.6
SIX2Q9NPC8 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SIX2Q9NPC8 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SIX2Q9NPC8 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SIX2Q9NPC8 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
SIX2Q9NPC8 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SIX2Q9NPC8 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
SIX2Q9NPC8 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SIX2Q9NPC8 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC18.82■□□□□ 0.6
SIX2Q9NPC8 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC18.82■□□□□ 0.6
SIX2Q9NPC8 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SIX2Q9NPC8 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SIX2Q9NPC8 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SIX2Q9NPC8 AC132938.5-201ENST00000624980 1813 ntBASIC18.82■□□□□ 0.6
SIX2Q9NPC8 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
SIX2Q9NPC8 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SIX2Q9NPC8 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC18.82■□□□□ 0.6
SIX2Q9NPC8 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC18.82■□□□□ 0.6
SIX2Q9NPC8 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC18.82■□□□□ 0.6
SIX2Q9NPC8 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC18.82■□□□□ 0.6
SIX2Q9NPC8 AD001527.2-201ENST00000622994 785 ntBASIC18.82■□□□□ 0.6
SIX2Q9NPC8 AP000550.4-202ENST00000639755 178 ntBASIC18.82■□□□□ 0.6
SIX2Q9NPC8 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC18.82■□□□□ 0.6
SIX2Q9NPC8 FUT8-AS1-201ENST00000621019 1521 ntBASIC18.82■□□□□ 0.6
SIX2Q9NPC8 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
SIX2Q9NPC8 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC18.82■□□□□ 0.6
SIX2Q9NPC8 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
SIX2Q9NPC8 AC093525.9-201ENST00000624961 1746 ntBASIC18.82■□□□□ 0.6
SIX2Q9NPC8 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
SIX2Q9NPC8 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
SIX2Q9NPC8 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SIX2Q9NPC8 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
SIX2Q9NPC8 AC099398.1-201ENST00000567919 2776 ntBASIC18.81■□□□□ 0.6
SIX2Q9NPC8 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC18.81■□□□□ 0.6
SIX2Q9NPC8 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC18.81■□□□□ 0.6
SIX2Q9NPC8 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SIX2Q9NPC8 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SIX2Q9NPC8 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SIX2Q9NPC8 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SIX2Q9NPC8 LINC02012-201ENST00000608206 1725 ntBASIC18.81■□□□□ 0.6
SIX2Q9NPC8 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SIX2Q9NPC8 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SIX2Q9NPC8 ENSA-206ENST00000361631 725 ntTSL 2 BASIC18.81■□□□□ 0.6
SIX2Q9NPC8 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC18.81■□□□□ 0.6
SIX2Q9NPC8 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
SIX2Q9NPC8 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC18.81■□□□□ 0.6
SIX2Q9NPC8 DANCR-204ENST00000444958 709 ntTSL 3 BASIC18.81■□□□□ 0.6
SIX2Q9NPC8 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
SIX2Q9NPC8 KRT17P6-201ENST00000453795 1220 ntBASIC18.81■□□□□ 0.6
SIX2Q9NPC8 VENTXP7-201ENST00000475503 772 ntBASIC18.81■□□□□ 0.6
SIX2Q9NPC8 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC18.81■□□□□ 0.6
SIX2Q9NPC8 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC18.81■□□□□ 0.6
SIX2Q9NPC8 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
SIX2Q9NPC8 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC18.81■□□□□ 0.6
SIX2Q9NPC8 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC18.81■□□□□ 0.6
SIX2Q9NPC8 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SIX2Q9NPC8 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC18.81■□□□□ 0.6
SIX2Q9NPC8 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
SIX2Q9NPC8 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms