Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC17.82■□□□□ 0.44
CHFRQ96EP1 RHOQP3-201ENST00000437982 621 ntBASIC17.82■□□□□ 0.44
CHFRQ96EP1 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC17.82■□□□□ 0.44
CHFRQ96EP1 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC17.82■□□□□ 0.44
CHFRQ96EP1 PDPK2P-202ENST00000562415 1191 ntBASIC17.82■□□□□ 0.44
CHFRQ96EP1 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
CHFRQ96EP1 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC17.82■□□□□ 0.44
CHFRQ96EP1 RPS15-207ENST00000591032 550 ntTSL 3 BASIC17.82■□□□□ 0.44
CHFRQ96EP1 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC17.82■□□□□ 0.44
CHFRQ96EP1 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC17.82■□□□□ 0.44
CHFRQ96EP1 LINC02084-201ENST00000606069 1096 ntBASIC17.82■□□□□ 0.44
CHFRQ96EP1 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC17.82■□□□□ 0.44
CHFRQ96EP1 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC17.82■□□□□ 0.44
CHFRQ96EP1 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CHFRQ96EP1 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CHFRQ96EP1 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC17.82■□□□□ 0.44
CHFRQ96EP1 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
CHFRQ96EP1 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CHFRQ96EP1 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC17.82■□□□□ 0.44
CHFRQ96EP1 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CHFRQ96EP1 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CHFRQ96EP1 ELL2P1-201ENST00000413990 1906 ntBASIC17.82■□□□□ 0.44
CHFRQ96EP1 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CHFRQ96EP1 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CHFRQ96EP1 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CHFRQ96EP1 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
CHFRQ96EP1 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC17.82■□□□□ 0.44
CHFRQ96EP1 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CHFRQ96EP1 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CHFRQ96EP1 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC17.81■□□□□ 0.44
CHFRQ96EP1 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
CHFRQ96EP1 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
CHFRQ96EP1 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CHFRQ96EP1 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CHFRQ96EP1 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
CHFRQ96EP1 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CHFRQ96EP1 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
CHFRQ96EP1 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC17.81■□□□□ 0.44
CHFRQ96EP1 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
CHFRQ96EP1 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CHFRQ96EP1 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CHFRQ96EP1 AP002414.1-201ENST00000391405 1147 ntBASIC17.81■□□□□ 0.44
CHFRQ96EP1 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
CHFRQ96EP1 MRPL20P1-201ENST00000400819 433 ntBASIC17.81■□□□□ 0.44
CHFRQ96EP1 MKNK2P1-201ENST00000437526 628 ntBASIC17.81■□□□□ 0.44
CHFRQ96EP1 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC17.81■□□□□ 0.44
CHFRQ96EP1 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC17.81■□□□□ 0.44
CHFRQ96EP1 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC17.81■□□□□ 0.44
CHFRQ96EP1 SNHG9-202ENST00000564014 471 ntBASIC17.81■□□□□ 0.44
CHFRQ96EP1 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC17.81■□□□□ 0.44
CHFRQ96EP1 AQP6-205ENST00000618286 829 ntTSL 5 BASIC17.81■□□□□ 0.44
CHFRQ96EP1 AC004877.2-201ENST00000623941 599 ntBASIC17.81■□□□□ 0.44
CHFRQ96EP1 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC17.81■□□□□ 0.44
CHFRQ96EP1 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC17.81■□□□□ 0.44
CHFRQ96EP1 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CHFRQ96EP1 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC17.81■□□□□ 0.44
CHFRQ96EP1 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC17.81■□□□□ 0.44
CHFRQ96EP1 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
CHFRQ96EP1 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CHFRQ96EP1 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC17.81■□□□□ 0.44
CHFRQ96EP1 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CHFRQ96EP1 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CHFRQ96EP1 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
CHFRQ96EP1 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC17.81■□□□□ 0.44
CHFRQ96EP1 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
CHFRQ96EP1 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC17.81■□□□□ 0.44
CHFRQ96EP1 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
CHFRQ96EP1 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC17.81■□□□□ 0.44
CHFRQ96EP1 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CHFRQ96EP1 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
CHFRQ96EP1 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CHFRQ96EP1 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CHFRQ96EP1 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC17.8■□□□□ 0.44
CHFRQ96EP1 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CHFRQ96EP1 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC17.8■□□□□ 0.44
CHFRQ96EP1 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CHFRQ96EP1 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC17.8■□□□□ 0.44
CHFRQ96EP1 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CHFRQ96EP1 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC17.8■□□□□ 0.44
CHFRQ96EP1 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
CHFRQ96EP1 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC17.8■□□□□ 0.44
CHFRQ96EP1 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CHFRQ96EP1 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CHFRQ96EP1 RFPL4AP1-201ENST00000530883 850 ntBASIC17.8■□□□□ 0.44
CHFRQ96EP1 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC17.8■□□□□ 0.44
CHFRQ96EP1 KRT19P2-202ENST00000557173 1012 ntBASIC17.8■□□□□ 0.44
CHFRQ96EP1 AC096734.2-201ENST00000562054 433 ntBASIC17.8■□□□□ 0.44
CHFRQ96EP1 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC17.8■□□□□ 0.44
CHFRQ96EP1 AC027612.4-201ENST00000605371 583 ntBASIC17.8■□□□□ 0.44
CHFRQ96EP1 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CHFRQ96EP1 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC17.8■□□□□ 0.44
CHFRQ96EP1 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC17.8■□□□□ 0.44
CHFRQ96EP1 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
CHFRQ96EP1 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CHFRQ96EP1 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
CHFRQ96EP1 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CHFRQ96EP1 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CHFRQ96EP1 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC17.79■□□□□ 0.44
CHFRQ96EP1 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
CHFRQ96EP1 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 57.7 ms