Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC19.43■□□□□ 0.7
CCDC112Q8NEF3 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC19.43■□□□□ 0.7
CCDC112Q8NEF3 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC19.43■□□□□ 0.7
CCDC112Q8NEF3 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC112Q8NEF3 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
CCDC112Q8NEF3 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC19.43■□□□□ 0.7
CCDC112Q8NEF3 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC112Q8NEF3 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC112Q8NEF3 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC112Q8NEF3 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
CCDC112Q8NEF3 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
CCDC112Q8NEF3 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC112Q8NEF3 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC19.42■□□□□ 0.7
CCDC112Q8NEF3 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC112Q8NEF3 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC112Q8NEF3 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC112Q8NEF3 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
CCDC112Q8NEF3 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC112Q8NEF3 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
CCDC112Q8NEF3 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC112Q8NEF3 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
CCDC112Q8NEF3 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC112Q8NEF3 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC19.42■□□□□ 0.7
CCDC112Q8NEF3 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC112Q8NEF3 MST1L-201ENST00000442552 2185 ntBASIC19.42■□□□□ 0.7
CCDC112Q8NEF3 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC112Q8NEF3 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
CCDC112Q8NEF3 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC112Q8NEF3 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC19.42■□□□□ 0.7
CCDC112Q8NEF3 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC19.42■□□□□ 0.7
CCDC112Q8NEF3 REXO1L11P-201ENST00000620964 1927 ntBASIC19.42■□□□□ 0.7
CCDC112Q8NEF3 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC112Q8NEF3 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC112Q8NEF3 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC19.42■□□□□ 0.7
CCDC112Q8NEF3 AC103702.1-201ENST00000548801 2630 ntBASIC19.42■□□□□ 0.7
CCDC112Q8NEF3 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC112Q8NEF3 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC112Q8NEF3 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
CCDC112Q8NEF3 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC19.42■□□□□ 0.7
CCDC112Q8NEF3 ANKRD26P3-201ENST00000454044 2748 ntBASIC19.42■□□□□ 0.7
CCDC112Q8NEF3 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC112Q8NEF3 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC112Q8NEF3 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC112Q8NEF3 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC112Q8NEF3 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC112Q8NEF3 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
CCDC112Q8NEF3 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC112Q8NEF3 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC112Q8NEF3 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC112Q8NEF3 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC19.41■□□□□ 0.7
CCDC112Q8NEF3 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC112Q8NEF3 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC19.41■□□□□ 0.7
CCDC112Q8NEF3 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC19.41■□□□□ 0.7
CCDC112Q8NEF3 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
CCDC112Q8NEF3 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
CCDC112Q8NEF3 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC112Q8NEF3 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC19.41■□□□□ 0.7
CCDC112Q8NEF3 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC112Q8NEF3 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC112Q8NEF3 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC112Q8NEF3 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC19.41■□□□□ 0.7
CCDC112Q8NEF3 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC19.41■□□□□ 0.7
CCDC112Q8NEF3 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC112Q8NEF3 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC112Q8NEF3 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC19.41■□□□□ 0.7
CCDC112Q8NEF3 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC19.41■□□□□ 0.7
CCDC112Q8NEF3 AC104390.1-201ENST00000555663 520 ntBASIC19.41■□□□□ 0.7
CCDC112Q8NEF3 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC112Q8NEF3 AP001412.1-201ENST00000608405 714 ntBASIC19.41■□□□□ 0.7
CCDC112Q8NEF3 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC112Q8NEF3 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
CCDC112Q8NEF3 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC112Q8NEF3 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC112Q8NEF3 AC016396.2-201ENST00000562575 1417 ntBASIC19.41■□□□□ 0.7
CCDC112Q8NEF3 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC112Q8NEF3 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC112Q8NEF3 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
CCDC112Q8NEF3 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC112Q8NEF3 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC112Q8NEF3 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
CCDC112Q8NEF3 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC112Q8NEF3 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC112Q8NEF3 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC112Q8NEF3 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
CCDC112Q8NEF3 LINC00554-201ENST00000564841 3011 ntBASIC19.4■□□□□ 0.7
CCDC112Q8NEF3 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC112Q8NEF3 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC112Q8NEF3 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC112Q8NEF3 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC112Q8NEF3 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC112Q8NEF3 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC19.4■□□□□ 0.7
CCDC112Q8NEF3 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC19.4■□□□□ 0.7
CCDC112Q8NEF3 RARRES2P10-201ENST00000564312 460 ntBASIC19.4■□□□□ 0.7
CCDC112Q8NEF3 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC19.4■□□□□ 0.7
CCDC112Q8NEF3 AL356309.3-201ENST00000624132 1934 ntBASIC19.4■□□□□ 0.7
CCDC112Q8NEF3 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC19.4■□□□□ 0.7
CCDC112Q8NEF3 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC112Q8NEF3 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC112Q8NEF3 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
CCDC112Q8NEF3 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC19.4■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms