Protein–RNA interactions for Protein: Q6DD88

ATL3, Atlastin-3, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3Q6DD88 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
ATL3Q6DD88 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
ATL3Q6DD88 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC20.05■□□□□ 0.8
ATL3Q6DD88 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
ATL3Q6DD88 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
ATL3Q6DD88 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC20.05■□□□□ 0.8
ATL3Q6DD88 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
ATL3Q6DD88 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
ATL3Q6DD88 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
ATL3Q6DD88 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC20.05■□□□□ 0.8
ATL3Q6DD88 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
ATL3Q6DD88 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
ATL3Q6DD88 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
ATL3Q6DD88 AC103564.2-201ENST00000432853 1299 ntBASIC20.05■□□□□ 0.8
ATL3Q6DD88 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC20.05■□□□□ 0.8
ATL3Q6DD88 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
ATL3Q6DD88 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC20.05■□□□□ 0.8
ATL3Q6DD88 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC20.05■□□□□ 0.8
ATL3Q6DD88 AC006011.2-201ENST00000621313 1158 ntBASIC20.05■□□□□ 0.8
ATL3Q6DD88 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
ATL3Q6DD88 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC20.05■□□□□ 0.8
ATL3Q6DD88 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
ATL3Q6DD88 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
ATL3Q6DD88 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC20.05■□□□□ 0.8
ATL3Q6DD88 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
ATL3Q6DD88 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
ATL3Q6DD88 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
ATL3Q6DD88 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
ATL3Q6DD88 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC20.04■□□□□ 0.8
ATL3Q6DD88 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
ATL3Q6DD88 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC20.04■□□□□ 0.8
ATL3Q6DD88 OS9-205ENST00000413095 1660 ntTSL 2 BASIC20.04■□□□□ 0.8
ATL3Q6DD88 AC125634.1-201ENST00000438758 1403 ntBASIC20.04■□□□□ 0.8
ATL3Q6DD88 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
ATL3Q6DD88 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
ATL3Q6DD88 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
ATL3Q6DD88 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
ATL3Q6DD88 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
ATL3Q6DD88 ENSA-206ENST00000361631 725 ntTSL 2 BASIC20.04■□□□□ 0.8
ATL3Q6DD88 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
ATL3Q6DD88 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC20.04■□□□□ 0.8
ATL3Q6DD88 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC20.04■□□□□ 0.8
ATL3Q6DD88 SPDYE13P-201ENST00000445314 798 ntBASIC20.04■□□□□ 0.8
ATL3Q6DD88 RN7SL606P-201ENST00000472779 293 ntBASIC20.04■□□□□ 0.8
ATL3Q6DD88 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC20.04■□□□□ 0.8
ATL3Q6DD88 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
ATL3Q6DD88 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
ATL3Q6DD88 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
ATL3Q6DD88 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC20.04■□□□□ 0.8
ATL3Q6DD88 AC106886.4-201ENST00000623557 2502 ntBASIC20.04■□□□□ 0.8
ATL3Q6DD88 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
ATL3Q6DD88 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
ATL3Q6DD88 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC20.04■□□□□ 0.8
ATL3Q6DD88 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
ATL3Q6DD88 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
ATL3Q6DD88 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
ATL3Q6DD88 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
ATL3Q6DD88 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
ATL3Q6DD88 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
ATL3Q6DD88 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
ATL3Q6DD88 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC20.03■□□□□ 0.8
ATL3Q6DD88 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
ATL3Q6DD88 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
ATL3Q6DD88 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
ATL3Q6DD88 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
ATL3Q6DD88 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC20.03■□□□□ 0.8
ATL3Q6DD88 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
ATL3Q6DD88 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC20.03■□□□□ 0.8
ATL3Q6DD88 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
ATL3Q6DD88 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
ATL3Q6DD88 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
ATL3Q6DD88 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
ATL3Q6DD88 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC20.03■□□□□ 0.8
ATL3Q6DD88 AC124947.2-201ENST00000547118 1133 ntBASIC20.03■□□□□ 0.8
ATL3Q6DD88 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC20.03■□□□□ 0.8
ATL3Q6DD88 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC20.03■□□□□ 0.8
ATL3Q6DD88 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
ATL3Q6DD88 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
ATL3Q6DD88 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
ATL3Q6DD88 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
ATL3Q6DD88 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC20.03■□□□□ 0.8
ATL3Q6DD88 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
ATL3Q6DD88 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC20.03■□□□□ 0.8
ATL3Q6DD88 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC20.03■□□□□ 0.8
ATL3Q6DD88 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
ATL3Q6DD88 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
ATL3Q6DD88 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC20.02■□□□□ 0.8
ATL3Q6DD88 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC20.02■□□□□ 0.8
ATL3Q6DD88 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
ATL3Q6DD88 AGGF1P2-201ENST00000426656 2106 ntBASIC20.02■□□□□ 0.8
ATL3Q6DD88 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC20.02■□□□□ 0.8
ATL3Q6DD88 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
ATL3Q6DD88 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC20.02■□□□□ 0.8
ATL3Q6DD88 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
ATL3Q6DD88 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
ATL3Q6DD88 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
ATL3Q6DD88 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
ATL3Q6DD88 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC20.02■□□□□ 0.8
ATL3Q6DD88 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC20.02■□□□□ 0.8
ATL3Q6DD88 AC092647.4-201ENST00000457211 535 ntBASIC20.02■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms