Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 SPDYE8P-202ENST00000612377 668 ntBASIC17.4■□□□□ 0.38
CXCL12P48061 AL136317.3-201ENST00000618497 906 ntBASIC17.4■□□□□ 0.38
CXCL12P48061 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CXCL12P48061 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CXCL12P48061 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC17.4■□□□□ 0.38
CXCL12P48061 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CXCL12P48061 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CXCL12P48061 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC17.4■□□□□ 0.38
CXCL12P48061 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CXCL12P48061 AL031598.1-201ENST00000561511 1773 ntBASIC17.4■□□□□ 0.38
CXCL12P48061 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC17.4■□□□□ 0.38
CXCL12P48061 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CXCL12P48061 AC073592.3-201ENST00000625118 1834 ntBASIC17.4■□□□□ 0.38
CXCL12P48061 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CXCL12P48061 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
CXCL12P48061 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CXCL12P48061 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC17.4■□□□□ 0.38
CXCL12P48061 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC17.39■□□□□ 0.38
CXCL12P48061 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
CXCL12P48061 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC17.39■□□□□ 0.38
CXCL12P48061 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CXCL12P48061 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CXCL12P48061 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CXCL12P48061 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CXCL12P48061 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CXCL12P48061 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC17.39■□□□□ 0.37
CXCL12P48061 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CXCL12P48061 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC17.39■□□□□ 0.37
CXCL12P48061 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC17.39■□□□□ 0.37
CXCL12P48061 BASP1P1-201ENST00000430708 665 ntBASIC17.39■□□□□ 0.37
CXCL12P48061 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CXCL12P48061 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC17.39■□□□□ 0.37
CXCL12P48061 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CXCL12P48061 RBM7-207ENST00000544582 692 ntTSL 3 BASIC17.39■□□□□ 0.37
CXCL12P48061 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC17.39■□□□□ 0.37
CXCL12P48061 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CXCL12P48061 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CXCL12P48061 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CXCL12P48061 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
CXCL12P48061 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
CXCL12P48061 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
CXCL12P48061 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC17.39■□□□□ 0.37
CXCL12P48061 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC17.39■□□□□ 0.37
CXCL12P48061 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CXCL12P48061 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CXCL12P48061 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CXCL12P48061 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC17.39■□□□□ 0.37
CXCL12P48061 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC17.39■□□□□ 0.37
CXCL12P48061 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CXCL12P48061 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CXCL12P48061 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC17.38■□□□□ 0.37
CXCL12P48061 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC17.38■□□□□ 0.37
CXCL12P48061 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CXCL12P48061 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CXCL12P48061 KLK8-202ENST00000320838 456 ntTSL 5 BASIC17.38■□□□□ 0.37
CXCL12P48061 COPE-202ENST00000349893 948 ntTSL 2 BASIC17.38■□□□□ 0.37
CXCL12P48061 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC17.38■□□□□ 0.37
CXCL12P48061 AL355306.1-201ENST00000415580 579 ntBASIC17.38■□□□□ 0.37
CXCL12P48061 AC055876.3-201ENST00000431496 288 ntBASIC17.38■□□□□ 0.37
CXCL12P48061 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC17.38■□□□□ 0.37
CXCL12P48061 AL592309.1-201ENST00000443127 649 ntBASIC17.38■□□□□ 0.37
CXCL12P48061 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC17.38■□□□□ 0.37
CXCL12P48061 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC17.38■□□□□ 0.37
CXCL12P48061 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC17.38■□□□□ 0.37
CXCL12P48061 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC17.38■□□□□ 0.37
CXCL12P48061 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC17.38■□□□□ 0.37
CXCL12P48061 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC17.38■□□□□ 0.37
CXCL12P48061 AC138649.4-201ENST00000612222 287 ntBASIC17.38■□□□□ 0.37
CXCL12P48061 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CXCL12P48061 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
CXCL12P48061 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CXCL12P48061 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CXCL12P48061 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC17.38■□□□□ 0.37
CXCL12P48061 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
CXCL12P48061 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC17.38■□□□□ 0.37
CXCL12P48061 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
CXCL12P48061 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
CXCL12P48061 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC17.37■□□□□ 0.37
CXCL12P48061 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC17.37■□□□□ 0.37
CXCL12P48061 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CXCL12P48061 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CXCL12P48061 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
CXCL12P48061 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
CXCL12P48061 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
CXCL12P48061 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC17.37■□□□□ 0.37
CXCL12P48061 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CXCL12P48061 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC17.37■□□□□ 0.37
CXCL12P48061 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC17.37■□□□□ 0.37
CXCL12P48061 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC17.37■□□□□ 0.37
CXCL12P48061 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CXCL12P48061 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CXCL12P48061 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
CXCL12P48061 AC069335.1-201ENST00000489972 472 ntBASIC17.37■□□□□ 0.37
CXCL12P48061 TERF1P3-201ENST00000505638 1227 ntBASIC17.37■□□□□ 0.37
CXCL12P48061 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC17.37■□□□□ 0.37
CXCL12P48061 KRT8P48-201ENST00000515599 1220 ntBASIC17.37■□□□□ 0.37
CXCL12P48061 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC17.37■□□□□ 0.37
CXCL12P48061 PUDP-206ENST00000540122 825 ntTSL 2 BASIC17.37■□□□□ 0.37
CXCL12P48061 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC17.37■□□□□ 0.37
CXCL12P48061 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms