Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC17.7■□□□□ 0.42
PTPN4P29074 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
PTPN4P29074 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PTPN4P29074 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PTPN4P29074 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
PTPN4P29074 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
PTPN4P29074 AL023284.2-201ENST00000405850 579 ntBASIC17.7■□□□□ 0.42
PTPN4P29074 HCG4P8-203ENST00000443049 980 ntBASIC17.7■□□□□ 0.42
PTPN4P29074 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC17.7■□□□□ 0.42
PTPN4P29074 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC17.7■□□□□ 0.42
PTPN4P29074 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC17.7■□□□□ 0.42
PTPN4P29074 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC17.7■□□□□ 0.42
PTPN4P29074 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC17.7■□□□□ 0.42
PTPN4P29074 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC17.7■□□□□ 0.42
PTPN4P29074 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC17.7■□□□□ 0.42
PTPN4P29074 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC17.7■□□□□ 0.42
PTPN4P29074 CLN6-214ENST00000636314 442 ntTSL 3 BASIC17.7■□□□□ 0.42
PTPN4P29074 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC17.7■□□□□ 0.42
PTPN4P29074 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
PTPN4P29074 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
PTPN4P29074 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
PTPN4P29074 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC17.7■□□□□ 0.42
PTPN4P29074 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC17.7■□□□□ 0.42
PTPN4P29074 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC17.7■□□□□ 0.42
PTPN4P29074 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC17.7■□□□□ 0.42
PTPN4P29074 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PTPN4P29074 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PTPN4P29074 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC17.7■□□□□ 0.42
PTPN4P29074 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
PTPN4P29074 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PTPN4P29074 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
PTPN4P29074 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC17.69■□□□□ 0.42
PTPN4P29074 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PTPN4P29074 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
PTPN4P29074 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PTPN4P29074 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PTPN4P29074 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC17.69■□□□□ 0.42
PTPN4P29074 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PTPN4P29074 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
PTPN4P29074 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
PTPN4P29074 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
PTPN4P29074 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
PTPN4P29074 IPPK-202ENST00000375522 882 ntTSL 3 BASIC17.69■□□□□ 0.42
PTPN4P29074 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
PTPN4P29074 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
PTPN4P29074 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC17.69■□□□□ 0.42
PTPN4P29074 RASA4DP-201ENST00000460726 1199 ntBASIC17.69■□□□□ 0.42
PTPN4P29074 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC17.69■□□□□ 0.42
PTPN4P29074 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC17.69■□□□□ 0.42
PTPN4P29074 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC17.69■□□□□ 0.42
PTPN4P29074 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC17.69■□□□□ 0.42
PTPN4P29074 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PTPN4P29074 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
PTPN4P29074 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC17.69■□□□□ 0.42
PTPN4P29074 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PTPN4P29074 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
PTPN4P29074 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC17.69■□□□□ 0.42
PTPN4P29074 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PTPN4P29074 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
PTPN4P29074 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
PTPN4P29074 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PTPN4P29074 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
PTPN4P29074 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PTPN4P29074 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC17.68■□□□□ 0.42
PTPN4P29074 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PTPN4P29074 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
PTPN4P29074 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
PTPN4P29074 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC17.68■□□□□ 0.42
PTPN4P29074 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC17.68■□□□□ 0.42
PTPN4P29074 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
PTPN4P29074 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC17.68■□□□□ 0.42
PTPN4P29074 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
PTPN4P29074 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PTPN4P29074 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
PTPN4P29074 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PTPN4P29074 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
PTPN4P29074 HBZP1-201ENST00000354915 429 ntBASIC17.68■□□□□ 0.42
PTPN4P29074 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
PTPN4P29074 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PTPN4P29074 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC17.68■□□□□ 0.42
PTPN4P29074 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC17.68■□□□□ 0.42
PTPN4P29074 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC17.68■□□□□ 0.42
PTPN4P29074 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC17.68■□□□□ 0.42
PTPN4P29074 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
PTPN4P29074 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
PTPN4P29074 MCCD1P1-208ENST00000445732 328 ntBASIC17.68■□□□□ 0.42
PTPN4P29074 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC17.68■□□□□ 0.42
PTPN4P29074 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC17.68■□□□□ 0.42
PTPN4P29074 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC17.68■□□□□ 0.42
PTPN4P29074 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PTPN4P29074 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC17.68■□□□□ 0.42
PTPN4P29074 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
PTPN4P29074 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC17.68■□□□□ 0.42
PTPN4P29074 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
PTPN4P29074 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
PTPN4P29074 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PTPN4P29074 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC17.68■□□□□ 0.42
PTPN4P29074 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
PTPN4P29074 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC17.68■□□□□ 0.42
PTPN4P29074 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 54.6 ms