Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SMIM28A0A1B0GU29 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC18.81■□□□□ 0.6
SMIM28A0A1B0GU29 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
SMIM28A0A1B0GU29 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
SMIM28A0A1B0GU29 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SMIM28A0A1B0GU29 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
SMIM28A0A1B0GU29 CALM1-205ENST00000553542 877 ntTSL 5 BASIC18.81■□□□□ 0.6
SMIM28A0A1B0GU29 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SMIM28A0A1B0GU29 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
SMIM28A0A1B0GU29 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SMIM28A0A1B0GU29 PGM5P2-202ENST00000637225 1043 ntBASIC18.81■□□□□ 0.6
SMIM28A0A1B0GU29 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SMIM28A0A1B0GU29 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SMIM28A0A1B0GU29 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
SMIM28A0A1B0GU29 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC18.81■□□□□ 0.6
SMIM28A0A1B0GU29 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC18.81■□□□□ 0.6
SMIM28A0A1B0GU29 NOC2LP1-202ENST00000452600 2235 ntBASIC18.81■□□□□ 0.6
SMIM28A0A1B0GU29 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
SMIM28A0A1B0GU29 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
SMIM28A0A1B0GU29 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SMIM28A0A1B0GU29 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SMIM28A0A1B0GU29 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC18.8■□□□□ 0.6
SMIM28A0A1B0GU29 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
SMIM28A0A1B0GU29 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SMIM28A0A1B0GU29 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SMIM28A0A1B0GU29 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SMIM28A0A1B0GU29 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC18.8■□□□□ 0.6
SMIM28A0A1B0GU29 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SMIM28A0A1B0GU29 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SMIM28A0A1B0GU29 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC18.8■□□□□ 0.6
SMIM28A0A1B0GU29 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SMIM28A0A1B0GU29 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SMIM28A0A1B0GU29 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC18.8■□□□□ 0.6
SMIM28A0A1B0GU29 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SMIM28A0A1B0GU29 LBH-204ENST00000406087 559 ntTSL 4 BASIC18.8■□□□□ 0.6
SMIM28A0A1B0GU29 ELK2BP-201ENST00000415014 1224 ntBASIC18.8■□□□□ 0.6
SMIM28A0A1B0GU29 AC009947.1-201ENST00000444350 727 ntBASIC18.8■□□□□ 0.6
SMIM28A0A1B0GU29 POLD2P1-201ENST00000511220 997 ntBASIC18.8■□□□□ 0.6
SMIM28A0A1B0GU29 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC18.8■□□□□ 0.6
SMIM28A0A1B0GU29 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC18.8■□□□□ 0.6
SMIM28A0A1B0GU29 AL139424.1-201ENST00000607572 797 ntBASIC18.8■□□□□ 0.6
SMIM28A0A1B0GU29 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC18.8■□□□□ 0.6
SMIM28A0A1B0GU29 AC005593.1-201ENST00000624894 515 ntBASIC18.8■□□□□ 0.6
SMIM28A0A1B0GU29 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SMIM28A0A1B0GU29 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
SMIM28A0A1B0GU29 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SMIM28A0A1B0GU29 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SMIM28A0A1B0GU29 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
SMIM28A0A1B0GU29 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC18.8■□□□□ 0.6
SMIM28A0A1B0GU29 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
SMIM28A0A1B0GU29 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC18.8■□□□□ 0.6
SMIM28A0A1B0GU29 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
SMIM28A0A1B0GU29 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC18.8■□□□□ 0.6
SMIM28A0A1B0GU29 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC18.79■□□□□ 0.6
SMIM28A0A1B0GU29 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC18.79■□□□□ 0.6
SMIM28A0A1B0GU29 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC18.79■□□□□ 0.6
SMIM28A0A1B0GU29 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SMIM28A0A1B0GU29 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SMIM28A0A1B0GU29 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC18.79■□□□□ 0.6
SMIM28A0A1B0GU29 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SMIM28A0A1B0GU29 AC008764.6-201ENST00000595909 2069 ntBASIC18.79■□□□□ 0.6
SMIM28A0A1B0GU29 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SMIM28A0A1B0GU29 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC18.79■□□□□ 0.6
SMIM28A0A1B0GU29 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SMIM28A0A1B0GU29 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SMIM28A0A1B0GU29 ENSA-206ENST00000361631 725 ntTSL 2 BASIC18.79■□□□□ 0.6
SMIM28A0A1B0GU29 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC18.79■□□□□ 0.6
SMIM28A0A1B0GU29 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC18.79■□□□□ 0.6
SMIM28A0A1B0GU29 MIR940-201ENST00000401276 94 ntBASIC18.79■□□□□ 0.6
SMIM28A0A1B0GU29 LINC00982-205ENST00000420957 435 ntBASIC18.79■□□□□ 0.6
SMIM28A0A1B0GU29 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC18.79■□□□□ 0.6
SMIM28A0A1B0GU29 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
SMIM28A0A1B0GU29 AL139327.4-201ENST00000612362 153 ntBASIC18.79■□□□□ 0.6
SMIM28A0A1B0GU29 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SMIM28A0A1B0GU29 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC18.79■□□□□ 0.6
SMIM28A0A1B0GU29 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SMIM28A0A1B0GU29 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC18.79■□□□□ 0.6
SMIM28A0A1B0GU29 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SMIM28A0A1B0GU29 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SMIM28A0A1B0GU29 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC18.79■□□□□ 0.6
SMIM28A0A1B0GU29 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SMIM28A0A1B0GU29 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
SMIM28A0A1B0GU29 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SMIM28A0A1B0GU29 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
SMIM28A0A1B0GU29 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SMIM28A0A1B0GU29 AC046185.3-201ENST00000623228 1824 ntBASIC18.79■□□□□ 0.6
SMIM28A0A1B0GU29 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SMIM28A0A1B0GU29 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
SMIM28A0A1B0GU29 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
SMIM28A0A1B0GU29 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
SMIM28A0A1B0GU29 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SMIM28A0A1B0GU29 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC18.78■□□□□ 0.6
SMIM28A0A1B0GU29 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SMIM28A0A1B0GU29 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SMIM28A0A1B0GU29 AL355312.1-201ENST00000407115 2176 ntBASIC18.78■□□□□ 0.6
SMIM28A0A1B0GU29 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC18.78■□□□□ 0.6
SMIM28A0A1B0GU29 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SMIM28A0A1B0GU29 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC18.78■□□□□ 0.6
SMIM28A0A1B0GU29 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SMIM28A0A1B0GU29 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 47.7 ms