Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC16.48■□□□□ 0.23
VCX3AQ9NNX9 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
VCX3AQ9NNX9 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VCX3AQ9NNX9 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC16.48■□□□□ 0.23
VCX3AQ9NNX9 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC16.48■□□□□ 0.23
VCX3AQ9NNX9 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
VCX3AQ9NNX9 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC16.48■□□□□ 0.23
VCX3AQ9NNX9 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
VCX3AQ9NNX9 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VCX3AQ9NNX9 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC16.48■□□□□ 0.23
VCX3AQ9NNX9 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
VCX3AQ9NNX9 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VCX3AQ9NNX9 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VCX3AQ9NNX9 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
VCX3AQ9NNX9 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VCX3AQ9NNX9 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC16.47■□□□□ 0.23
VCX3AQ9NNX9 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
VCX3AQ9NNX9 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
VCX3AQ9NNX9 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VCX3AQ9NNX9 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
VCX3AQ9NNX9 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
VCX3AQ9NNX9 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VCX3AQ9NNX9 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VCX3AQ9NNX9 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
VCX3AQ9NNX9 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VCX3AQ9NNX9 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC16.47■□□□□ 0.23
VCX3AQ9NNX9 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC16.47■□□□□ 0.23
VCX3AQ9NNX9 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VCX3AQ9NNX9 PNN-205ENST00000556530 601 ntTSL 2 BASIC16.47■□□□□ 0.23
VCX3AQ9NNX9 OR10C1-204ENST00000622521 1039 ntBASIC16.47■□□□□ 0.23
VCX3AQ9NNX9 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
VCX3AQ9NNX9 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
VCX3AQ9NNX9 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC16.47■□□□□ 0.23
VCX3AQ9NNX9 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC16.47■□□□□ 0.23
VCX3AQ9NNX9 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VCX3AQ9NNX9 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC16.47■□□□□ 0.23
VCX3AQ9NNX9 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC16.47■□□□□ 0.23
VCX3AQ9NNX9 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VCX3AQ9NNX9 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VCX3AQ9NNX9 C8orf49-201ENST00000525043 1968 ntBASIC16.47■□□□□ 0.23
VCX3AQ9NNX9 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VCX3AQ9NNX9 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC16.47■□□□□ 0.23
VCX3AQ9NNX9 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
VCX3AQ9NNX9 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VCX3AQ9NNX9 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC16.47■□□□□ 0.23
VCX3AQ9NNX9 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
VCX3AQ9NNX9 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC16.47■□□□□ 0.23
VCX3AQ9NNX9 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC16.46■□□□□ 0.23
VCX3AQ9NNX9 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
VCX3AQ9NNX9 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC16.46■□□□□ 0.23
VCX3AQ9NNX9 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC16.46■□□□□ 0.23
VCX3AQ9NNX9 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
VCX3AQ9NNX9 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
VCX3AQ9NNX9 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
VCX3AQ9NNX9 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
VCX3AQ9NNX9 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC16.46■□□□□ 0.23
VCX3AQ9NNX9 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
VCX3AQ9NNX9 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.46■□□□□ 0.23
VCX3AQ9NNX9 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
VCX3AQ9NNX9 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
VCX3AQ9NNX9 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
VCX3AQ9NNX9 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
VCX3AQ9NNX9 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC16.46■□□□□ 0.23
VCX3AQ9NNX9 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
VCX3AQ9NNX9 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
VCX3AQ9NNX9 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC16.46■□□□□ 0.23
VCX3AQ9NNX9 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
VCX3AQ9NNX9 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC16.46■□□□□ 0.23
VCX3AQ9NNX9 RAB43-208ENST00000615093 783 ntTSL 5 BASIC16.46■□□□□ 0.23
VCX3AQ9NNX9 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC16.46■□□□□ 0.23
VCX3AQ9NNX9 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC16.46■□□□□ 0.23
VCX3AQ9NNX9 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC16.46■□□□□ 0.23
VCX3AQ9NNX9 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC16.46■□□□□ 0.23
VCX3AQ9NNX9 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
VCX3AQ9NNX9 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
VCX3AQ9NNX9 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC16.46■□□□□ 0.23
VCX3AQ9NNX9 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
VCX3AQ9NNX9 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC16.46■□□□□ 0.22
VCX3AQ9NNX9 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
VCX3AQ9NNX9 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VCX3AQ9NNX9 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC16.45■□□□□ 0.22
VCX3AQ9NNX9 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VCX3AQ9NNX9 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
VCX3AQ9NNX9 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VCX3AQ9NNX9 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VCX3AQ9NNX9 AC126177.1-201ENST00000547829 2218 ntBASIC16.45■□□□□ 0.22
VCX3AQ9NNX9 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC16.45■□□□□ 0.22
VCX3AQ9NNX9 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC16.45■□□□□ 0.22
VCX3AQ9NNX9 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
VCX3AQ9NNX9 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
VCX3AQ9NNX9 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
VCX3AQ9NNX9 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC16.45■□□□□ 0.22
VCX3AQ9NNX9 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC16.45■□□□□ 0.22
VCX3AQ9NNX9 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
VCX3AQ9NNX9 CNN2P6-201ENST00000439038 900 ntBASIC16.45■□□□□ 0.22
VCX3AQ9NNX9 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC16.45■□□□□ 0.22
VCX3AQ9NNX9 RHOD-202ENST00000532559 538 ntTSL 3 BASIC16.45■□□□□ 0.22
VCX3AQ9NNX9 ISCU-212ENST00000547005 795 ntTSL 3 BASIC16.45■□□□□ 0.22
VCX3AQ9NNX9 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC16.45■□□□□ 0.22
VCX3AQ9NNX9 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms