Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 AL096828.2-201ENST00000567259 1965 ntBASIC19.28■□□□□ 0.68
TRAIPQ9BWF2 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRAIPQ9BWF2 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC19.28■□□□□ 0.68
TRAIPQ9BWF2 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
TRAIPQ9BWF2 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRAIPQ9BWF2 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRAIPQ9BWF2 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC19.28■□□□□ 0.68
TRAIPQ9BWF2 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRAIPQ9BWF2 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRAIPQ9BWF2 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC19.28■□□□□ 0.68
TRAIPQ9BWF2 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC19.28■□□□□ 0.68
TRAIPQ9BWF2 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC19.28■□□□□ 0.68
TRAIPQ9BWF2 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC19.28■□□□□ 0.68
TRAIPQ9BWF2 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC19.28■□□□□ 0.68
TRAIPQ9BWF2 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC19.28■□□□□ 0.68
TRAIPQ9BWF2 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC19.28■□□□□ 0.68
TRAIPQ9BWF2 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC19.28■□□□□ 0.68
TRAIPQ9BWF2 PIN1-206ENST00000587625 878 ntTSL 2 BASIC19.28■□□□□ 0.68
TRAIPQ9BWF2 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
TRAIPQ9BWF2 AC006538.3-201ENST00000612495 578 ntBASIC19.28■□□□□ 0.68
TRAIPQ9BWF2 AL022326.1-202ENST00000641533 845 ntBASIC19.28■□□□□ 0.68
TRAIPQ9BWF2 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
TRAIPQ9BWF2 ZNF259P1-201ENST00000407656 1365 ntBASIC19.28■□□□□ 0.68
TRAIPQ9BWF2 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRAIPQ9BWF2 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRAIPQ9BWF2 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
TRAIPQ9BWF2 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
TRAIPQ9BWF2 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
TRAIPQ9BWF2 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRAIPQ9BWF2 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRAIPQ9BWF2 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRAIPQ9BWF2 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC19.27■□□□□ 0.68
TRAIPQ9BWF2 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
TRAIPQ9BWF2 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRAIPQ9BWF2 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC19.27■□□□□ 0.68
TRAIPQ9BWF2 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
TRAIPQ9BWF2 LAGE3P1-201ENST00000425356 484 ntBASIC19.27■□□□□ 0.68
TRAIPQ9BWF2 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC19.27■□□□□ 0.68
TRAIPQ9BWF2 AC012640.2-201ENST00000561606 901 ntBASIC19.27■□□□□ 0.68
TRAIPQ9BWF2 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC19.27■□□□□ 0.68
TRAIPQ9BWF2 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
TRAIPQ9BWF2 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRAIPQ9BWF2 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC19.27■□□□□ 0.68
TRAIPQ9BWF2 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC19.27■□□□□ 0.68
TRAIPQ9BWF2 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRAIPQ9BWF2 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRAIPQ9BWF2 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRAIPQ9BWF2 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRAIPQ9BWF2 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC19.27■□□□□ 0.68
TRAIPQ9BWF2 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.67
TRAIPQ9BWF2 AL353593.2-201ENST00000602529 1483 ntBASIC19.27■□□□□ 0.67
TRAIPQ9BWF2 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC19.27■□□□□ 0.67
TRAIPQ9BWF2 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
TRAIPQ9BWF2 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.67
TRAIPQ9BWF2 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
TRAIPQ9BWF2 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC19.27■□□□□ 0.67
TRAIPQ9BWF2 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC19.26■□□□□ 0.67
TRAIPQ9BWF2 GATB-213ENST00000515812 1893 ntTSL 5 BASIC19.26■□□□□ 0.67
TRAIPQ9BWF2 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TRAIPQ9BWF2 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC19.26■□□□□ 0.67
TRAIPQ9BWF2 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC19.26■□□□□ 0.67
TRAIPQ9BWF2 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
TRAIPQ9BWF2 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
TRAIPQ9BWF2 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TRAIPQ9BWF2 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TRAIPQ9BWF2 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TRAIPQ9BWF2 CSF3-203ENST00000394148 622 ntTSL 3 BASIC19.26■□□□□ 0.67
TRAIPQ9BWF2 SPDYE21P-201ENST00000413323 827 ntBASIC19.26■□□□□ 0.67
TRAIPQ9BWF2 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC19.26■□□□□ 0.67
TRAIPQ9BWF2 MSRA-206ENST00000521209 814 ntTSL 3 BASIC19.26■□□□□ 0.67
TRAIPQ9BWF2 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC19.26■□□□□ 0.67
TRAIPQ9BWF2 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC19.26■□□□□ 0.67
TRAIPQ9BWF2 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC19.26■□□□□ 0.67
TRAIPQ9BWF2 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
TRAIPQ9BWF2 AC067852.2-201ENST00000590513 2313 ntBASIC19.26■□□□□ 0.67
TRAIPQ9BWF2 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
TRAIPQ9BWF2 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC19.26■□□□□ 0.67
TRAIPQ9BWF2 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
TRAIPQ9BWF2 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TRAIPQ9BWF2 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TRAIPQ9BWF2 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TRAIPQ9BWF2 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC19.25■□□□□ 0.67
TRAIPQ9BWF2 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
TRAIPQ9BWF2 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRAIPQ9BWF2 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC19.25■□□□□ 0.67
TRAIPQ9BWF2 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRAIPQ9BWF2 CD276-203ENST00000537340 2439 ntTSL 2 BASIC19.25■□□□□ 0.67
TRAIPQ9BWF2 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
TRAIPQ9BWF2 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRAIPQ9BWF2 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
TRAIPQ9BWF2 AP000997.3-201ENST00000623333 2250 ntBASIC19.25■□□□□ 0.67
TRAIPQ9BWF2 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
TRAIPQ9BWF2 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
TRAIPQ9BWF2 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRAIPQ9BWF2 POR-209ENST00000439269 1858 ntTSL 2 BASIC19.25■□□□□ 0.67
TRAIPQ9BWF2 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRAIPQ9BWF2 MED29-202ENST00000594368 1471 ntTSL 2 BASIC19.25■□□□□ 0.67
TRAIPQ9BWF2 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
TRAIPQ9BWF2 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
TRAIPQ9BWF2 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms