Protein–RNA interactions for Protein: Q9BTN0

LRFN3, Leucine-rich repeat and fibronectin type-III domain-containing protein 3, humanhuman

Predictions only

Length 628 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN3Q9BTN0 THTPA-206ENST00000556015 535 ntTSL 3 BASIC17.4■□□□□ 0.38
LRFN3Q9BTN0 CD7-202ENST00000578509 925 ntTSL 3 BASIC17.4■□□□□ 0.38
LRFN3Q9BTN0 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC17.4■□□□□ 0.38
LRFN3Q9BTN0 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC17.4■□□□□ 0.38
LRFN3Q9BTN0 AC008738.7-201ENST00000609744 511 ntBASIC17.4■□□□□ 0.38
LRFN3Q9BTN0 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
LRFN3Q9BTN0 AL138828.2-201ENST00000615812 383 ntBASIC17.4■□□□□ 0.38
LRFN3Q9BTN0 SPDYE12P-201ENST00000618416 771 ntBASIC17.4■□□□□ 0.38
LRFN3Q9BTN0 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
LRFN3Q9BTN0 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
LRFN3Q9BTN0 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC17.4■□□□□ 0.38
LRFN3Q9BTN0 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC17.4■□□□□ 0.38
LRFN3Q9BTN0 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
LRFN3Q9BTN0 USP39-204ENST00000409766 2033 ntTSL 2 BASIC17.4■□□□□ 0.38
LRFN3Q9BTN0 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC17.4■□□□□ 0.38
LRFN3Q9BTN0 STX3-203ENST00000529177 1571 ntTSL 2 BASIC17.4■□□□□ 0.38
LRFN3Q9BTN0 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC17.4■□□□□ 0.38
LRFN3Q9BTN0 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
LRFN3Q9BTN0 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC17.39■□□□□ 0.38
LRFN3Q9BTN0 AC093677.2-201ENST00000600169 1863 ntBASIC17.39■□□□□ 0.38
LRFN3Q9BTN0 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
LRFN3Q9BTN0 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LRFN3Q9BTN0 AIRN-201ENST00000601203 4374 ntBASIC17.39■□□□□ 0.37
LRFN3Q9BTN0 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC17.39■□□□□ 0.37
LRFN3Q9BTN0 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
LRFN3Q9BTN0 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
LRFN3Q9BTN0 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LRFN3Q9BTN0 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
LRFN3Q9BTN0 MIR1908-201ENST00000410394 80 ntBASIC17.39■□□□□ 0.37
LRFN3Q9BTN0 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
LRFN3Q9BTN0 GOLGA2P4-201ENST00000441462 777 ntBASIC17.39■□□□□ 0.37
LRFN3Q9BTN0 TTTY23B-201ENST00000442790 549 ntBASIC17.39■□□□□ 0.37
LRFN3Q9BTN0 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC17.39■□□□□ 0.37
LRFN3Q9BTN0 GLI4-203ENST00000517468 963 ntTSL 5 BASIC17.39■□□□□ 0.37
LRFN3Q9BTN0 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
LRFN3Q9BTN0 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC17.39■□□□□ 0.37
LRFN3Q9BTN0 SNX29P1-201ENST00000548357 1007 ntBASIC17.39■□□□□ 0.37
LRFN3Q9BTN0 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
LRFN3Q9BTN0 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
LRFN3Q9BTN0 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC17.39■□□□□ 0.37
LRFN3Q9BTN0 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC17.39■□□□□ 0.37
LRFN3Q9BTN0 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LRFN3Q9BTN0 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
LRFN3Q9BTN0 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC17.39■□□□□ 0.37
LRFN3Q9BTN0 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LRFN3Q9BTN0 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
LRFN3Q9BTN0 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LRFN3Q9BTN0 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC17.38■□□□□ 0.37
LRFN3Q9BTN0 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
LRFN3Q9BTN0 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
LRFN3Q9BTN0 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC17.38■□□□□ 0.37
LRFN3Q9BTN0 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
LRFN3Q9BTN0 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC17.38■□□□□ 0.37
LRFN3Q9BTN0 AC087499.6-201ENST00000411576 835 ntBASIC17.38■□□□□ 0.37
LRFN3Q9BTN0 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
LRFN3Q9BTN0 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC17.38■□□□□ 0.37
LRFN3Q9BTN0 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC17.38■□□□□ 0.37
LRFN3Q9BTN0 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC17.38■□□□□ 0.37
LRFN3Q9BTN0 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC17.38■□□□□ 0.37
LRFN3Q9BTN0 STK19B-204ENST00000512515 211 ntBASIC17.38■□□□□ 0.37
LRFN3Q9BTN0 COG4-212ENST00000564653 590 ntTSL 5 BASIC17.38■□□□□ 0.37
LRFN3Q9BTN0 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC17.38■□□□□ 0.37
LRFN3Q9BTN0 AC009407.1-201ENST00000568958 598 ntBASIC17.38■□□□□ 0.37
LRFN3Q9BTN0 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
LRFN3Q9BTN0 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LRFN3Q9BTN0 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC17.38■□□□□ 0.37
LRFN3Q9BTN0 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
LRFN3Q9BTN0 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC17.38■□□□□ 0.37
LRFN3Q9BTN0 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
LRFN3Q9BTN0 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC17.38■□□□□ 0.37
LRFN3Q9BTN0 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
LRFN3Q9BTN0 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC17.38■□□□□ 0.37
LRFN3Q9BTN0 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
LRFN3Q9BTN0 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
LRFN3Q9BTN0 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
LRFN3Q9BTN0 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC17.37■□□□□ 0.37
LRFN3Q9BTN0 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
LRFN3Q9BTN0 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC17.37■□□□□ 0.37
LRFN3Q9BTN0 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC17.37■□□□□ 0.37
LRFN3Q9BTN0 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
LRFN3Q9BTN0 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
LRFN3Q9BTN0 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
LRFN3Q9BTN0 GRAMD4P3-201ENST00000621665 1669 ntBASIC17.37■□□□□ 0.37
LRFN3Q9BTN0 DFFBP1-201ENST00000433250 979 ntBASIC17.37■□□□□ 0.37
LRFN3Q9BTN0 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC17.37■□□□□ 0.37
LRFN3Q9BTN0 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC17.37■□□□□ 0.37
LRFN3Q9BTN0 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
LRFN3Q9BTN0 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC17.37■□□□□ 0.37
LRFN3Q9BTN0 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC17.37■□□□□ 0.37
LRFN3Q9BTN0 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC17.37■□□□□ 0.37
LRFN3Q9BTN0 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC17.37■□□□□ 0.37
LRFN3Q9BTN0 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
LRFN3Q9BTN0 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
LRFN3Q9BTN0 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC17.37■□□□□ 0.37
LRFN3Q9BTN0 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
LRFN3Q9BTN0 AC018445.3-201ENST00000624177 1945 ntBASIC17.37■□□□□ 0.37
LRFN3Q9BTN0 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC17.37■□□□□ 0.37
LRFN3Q9BTN0 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC17.37■□□□□ 0.37
LRFN3Q9BTN0 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
LRFN3Q9BTN0 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC17.36■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms