Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 CD81-212ENST00000526072 1172 ntTSL 5 BASIC19.01■□□□□ 0.63
CCDC42Q96M95 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC19.01■□□□□ 0.63
CCDC42Q96M95 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC19.01■□□□□ 0.63
CCDC42Q96M95 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC42Q96M95 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC19.01■□□□□ 0.63
CCDC42Q96M95 AC009154.2-201ENST00000621177 724 ntBASIC19.01■□□□□ 0.63
CCDC42Q96M95 AC141257.4-201ENST00000634557 245 ntBASIC19.01■□□□□ 0.63
CCDC42Q96M95 AC136944.6-201ENST00000634818 245 ntBASIC19.01■□□□□ 0.63
CCDC42Q96M95 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC42Q96M95 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC42Q96M95 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC42Q96M95 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
CCDC42Q96M95 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC19.01■□□□□ 0.63
CCDC42Q96M95 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
CCDC42Q96M95 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC42Q96M95 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC42Q96M95 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC42Q96M95 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
CCDC42Q96M95 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC19.01■□□□□ 0.63
CCDC42Q96M95 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC19.01■□□□□ 0.63
CCDC42Q96M95 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
CCDC42Q96M95 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC19.01■□□□□ 0.63
CCDC42Q96M95 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
CCDC42Q96M95 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
CCDC42Q96M95 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
CCDC42Q96M95 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CCDC42Q96M95 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC19■□□□□ 0.63
CCDC42Q96M95 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC19■□□□□ 0.63
CCDC42Q96M95 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC19■□□□□ 0.63
CCDC42Q96M95 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
CCDC42Q96M95 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
CCDC42Q96M95 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CCDC42Q96M95 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC19■□□□□ 0.63
CCDC42Q96M95 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CCDC42Q96M95 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC19■□□□□ 0.63
CCDC42Q96M95 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC19■□□□□ 0.63
CCDC42Q96M95 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC19■□□□□ 0.63
CCDC42Q96M95 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC19■□□□□ 0.63
CCDC42Q96M95 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
CCDC42Q96M95 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC19■□□□□ 0.63
CCDC42Q96M95 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC19■□□□□ 0.63
CCDC42Q96M95 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC19■□□□□ 0.63
CCDC42Q96M95 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
CCDC42Q96M95 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC19■□□□□ 0.63
CCDC42Q96M95 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC19■□□□□ 0.63
CCDC42Q96M95 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
CCDC42Q96M95 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
CCDC42Q96M95 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
CCDC42Q96M95 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
CCDC42Q96M95 AL118508.1-201ENST00000613502 2345 ntBASIC19■□□□□ 0.63
CCDC42Q96M95 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC19■□□□□ 0.63
CCDC42Q96M95 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC19■□□□□ 0.63
CCDC42Q96M95 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CCDC42Q96M95 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC18.99■□□□□ 0.63
CCDC42Q96M95 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC42Q96M95 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC18.99■□□□□ 0.63
CCDC42Q96M95 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC42Q96M95 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
CCDC42Q96M95 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC42Q96M95 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC42Q96M95 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC42Q96M95 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC18.99■□□□□ 0.63
CCDC42Q96M95 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC42Q96M95 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC42Q96M95 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC18.99■□□□□ 0.63
CCDC42Q96M95 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC42Q96M95 LINC01568-207ENST00000641790 1380 ntBASIC18.99■□□□□ 0.63
CCDC42Q96M95 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC42Q96M95 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC42Q96M95 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC18.99■□□□□ 0.63
CCDC42Q96M95 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC42Q96M95 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC18.99■□□□□ 0.63
CCDC42Q96M95 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC18.99■□□□□ 0.63
CCDC42Q96M95 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC42Q96M95 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
CCDC42Q96M95 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC18.99■□□□□ 0.63
CCDC42Q96M95 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC42Q96M95 AC112698.1-201ENST00000510299 916 ntBASIC18.99■□□□□ 0.63
CCDC42Q96M95 AC004263.2-201ENST00000617183 678 ntBASIC18.99■□□□□ 0.63
CCDC42Q96M95 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC42Q96M95 TNRC18P3-201ENST00000441896 2691 ntBASIC18.99■□□□□ 0.63
CCDC42Q96M95 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC42Q96M95 AL391807.1-203ENST00000604392 2365 ntBASIC18.99■□□□□ 0.63
CCDC42Q96M95 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC42Q96M95 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC18.99■□□□□ 0.63
CCDC42Q96M95 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC18.99■□□□□ 0.63
CCDC42Q96M95 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC42Q96M95 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC42Q96M95 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC42Q96M95 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC42Q96M95 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC42Q96M95 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC18.98■□□□□ 0.63
CCDC42Q96M95 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC42Q96M95 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC42Q96M95 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC42Q96M95 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC42Q96M95 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC42Q96M95 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC42Q96M95 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC42Q96M95 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC18.98■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms