Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC23.08■■□□□ 1.29
USHBP1Q8N6Y0 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
USHBP1Q8N6Y0 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
USHBP1Q8N6Y0 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC23.08■■□□□ 1.28
USHBP1Q8N6Y0 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC23.08■■□□□ 1.28
USHBP1Q8N6Y0 MADD-208ENST00000405573 1823 ntTSL 5 BASIC23.08■■□□□ 1.28
USHBP1Q8N6Y0 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
USHBP1Q8N6Y0 PI4KAP1-204ENST00000612579 1703 ntBASIC23.08■■□□□ 1.28
USHBP1Q8N6Y0 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC23.08■■□□□ 1.28
USHBP1Q8N6Y0 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC23.08■■□□□ 1.28
USHBP1Q8N6Y0 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC23.08■■□□□ 1.28
USHBP1Q8N6Y0 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC23.07■■□□□ 1.28
USHBP1Q8N6Y0 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC23.07■■□□□ 1.28
USHBP1Q8N6Y0 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
USHBP1Q8N6Y0 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
USHBP1Q8N6Y0 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC23.07■■□□□ 1.28
USHBP1Q8N6Y0 AC009113.1-201ENST00000570267 2443 ntBASIC23.07■■□□□ 1.28
USHBP1Q8N6Y0 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
USHBP1Q8N6Y0 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
USHBP1Q8N6Y0 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
USHBP1Q8N6Y0 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
USHBP1Q8N6Y0 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC23.07■■□□□ 1.28
USHBP1Q8N6Y0 FAM58CP-201ENST00000435741 640 ntBASIC23.07■■□□□ 1.28
USHBP1Q8N6Y0 MKNK2P1-201ENST00000437526 628 ntBASIC23.07■■□□□ 1.28
USHBP1Q8N6Y0 RHOQP3-201ENST00000437982 621 ntBASIC23.07■■□□□ 1.28
USHBP1Q8N6Y0 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC23.07■■□□□ 1.28
USHBP1Q8N6Y0 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC23.07■■□□□ 1.28
USHBP1Q8N6Y0 CYMP-203ENST00000474680 1263 ntBASIC23.07■■□□□ 1.28
USHBP1Q8N6Y0 CD63-210ENST00000550776 870 ntTSL 5 BASIC23.07■■□□□ 1.28
USHBP1Q8N6Y0 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC23.07■■□□□ 1.28
USHBP1Q8N6Y0 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC23.07■■□□□ 1.28
USHBP1Q8N6Y0 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC23.07■■□□□ 1.28
USHBP1Q8N6Y0 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC23.07■■□□□ 1.28
USHBP1Q8N6Y0 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC23.07■■□□□ 1.28
USHBP1Q8N6Y0 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
USHBP1Q8N6Y0 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC23.07■■□□□ 1.28
USHBP1Q8N6Y0 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC23.07■■□□□ 1.28
USHBP1Q8N6Y0 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC23.07■■□□□ 1.28
USHBP1Q8N6Y0 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
USHBP1Q8N6Y0 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
USHBP1Q8N6Y0 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC23.06■■□□□ 1.28
USHBP1Q8N6Y0 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC23.06■■□□□ 1.28
USHBP1Q8N6Y0 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC23.06■■□□□ 1.28
USHBP1Q8N6Y0 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
USHBP1Q8N6Y0 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
USHBP1Q8N6Y0 AL138781.2-201ENST00000617896 1843 ntBASIC23.06■■□□□ 1.28
USHBP1Q8N6Y0 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
USHBP1Q8N6Y0 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
USHBP1Q8N6Y0 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC23.06■■□□□ 1.28
USHBP1Q8N6Y0 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
USHBP1Q8N6Y0 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
USHBP1Q8N6Y0 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
USHBP1Q8N6Y0 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC23.06■■□□□ 1.28
USHBP1Q8N6Y0 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC23.06■■□□□ 1.28
USHBP1Q8N6Y0 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC23.06■■□□□ 1.28
USHBP1Q8N6Y0 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC23.06■■□□□ 1.28
USHBP1Q8N6Y0 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC23.06■■□□□ 1.28
USHBP1Q8N6Y0 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC23.06■■□□□ 1.28
USHBP1Q8N6Y0 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC23.06■■□□□ 1.28
USHBP1Q8N6Y0 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC23.06■■□□□ 1.28
USHBP1Q8N6Y0 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC23.06■■□□□ 1.28
USHBP1Q8N6Y0 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC23.06■■□□□ 1.28
USHBP1Q8N6Y0 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC23.06■■□□□ 1.28
USHBP1Q8N6Y0 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
USHBP1Q8N6Y0 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC23.06■■□□□ 1.28
USHBP1Q8N6Y0 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC23.06■■□□□ 1.28
USHBP1Q8N6Y0 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC23.06■■□□□ 1.28
USHBP1Q8N6Y0 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
USHBP1Q8N6Y0 AL590787.1-201ENST00000568856 1315 ntBASIC23.06■■□□□ 1.28
USHBP1Q8N6Y0 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
USHBP1Q8N6Y0 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC23.05■■□□□ 1.28
USHBP1Q8N6Y0 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC23.05■■□□□ 1.28
USHBP1Q8N6Y0 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
USHBP1Q8N6Y0 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
USHBP1Q8N6Y0 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC23.05■■□□□ 1.28
USHBP1Q8N6Y0 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC23.05■■□□□ 1.28
USHBP1Q8N6Y0 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC23.05■■□□□ 1.28
USHBP1Q8N6Y0 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC23.05■■□□□ 1.28
USHBP1Q8N6Y0 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC23.05■■□□□ 1.28
USHBP1Q8N6Y0 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
USHBP1Q8N6Y0 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
USHBP1Q8N6Y0 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC23.05■■□□□ 1.28
USHBP1Q8N6Y0 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC23.05■■□□□ 1.28
USHBP1Q8N6Y0 SMN2-210ENST00000511812 867 ntTSL 2 BASIC23.05■■□□□ 1.28
USHBP1Q8N6Y0 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC23.05■■□□□ 1.28
USHBP1Q8N6Y0 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC23.05■■□□□ 1.28
USHBP1Q8N6Y0 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC23.05■■□□□ 1.28
USHBP1Q8N6Y0 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC23.05■■□□□ 1.28
USHBP1Q8N6Y0 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
USHBP1Q8N6Y0 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
USHBP1Q8N6Y0 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
USHBP1Q8N6Y0 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC23.05■■□□□ 1.28
USHBP1Q8N6Y0 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC23.05■■□□□ 1.28
USHBP1Q8N6Y0 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC23.05■■□□□ 1.28
USHBP1Q8N6Y0 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
USHBP1Q8N6Y0 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC23.05■■□□□ 1.28
USHBP1Q8N6Y0 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC23.05■■□□□ 1.28
USHBP1Q8N6Y0 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC23.05■■□□□ 1.28
USHBP1Q8N6Y0 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC23.04■■□□□ 1.28
USHBP1Q8N6Y0 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms