Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SYNE3Q6ZMZ3 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SYNE3Q6ZMZ3 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
SYNE3Q6ZMZ3 COX5BP2-201ENST00000392354 334 ntBASIC20.75■□□□□ 0.91
SYNE3Q6ZMZ3 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SYNE3Q6ZMZ3 DANCR-204ENST00000444958 709 ntTSL 3 BASIC20.75■□□□□ 0.91
SYNE3Q6ZMZ3 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC20.75■□□□□ 0.91
SYNE3Q6ZMZ3 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC20.75■□□□□ 0.91
SYNE3Q6ZMZ3 AP005901.3-202ENST00000581653 237 ntBASIC20.75■□□□□ 0.91
SYNE3Q6ZMZ3 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
SYNE3Q6ZMZ3 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC20.75■□□□□ 0.91
SYNE3Q6ZMZ3 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SYNE3Q6ZMZ3 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SYNE3Q6ZMZ3 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
SYNE3Q6ZMZ3 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC20.75■□□□□ 0.91
SYNE3Q6ZMZ3 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC20.75■□□□□ 0.91
SYNE3Q6ZMZ3 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SYNE3Q6ZMZ3 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC20.75■□□□□ 0.91
SYNE3Q6ZMZ3 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
SYNE3Q6ZMZ3 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SYNE3Q6ZMZ3 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SYNE3Q6ZMZ3 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
SYNE3Q6ZMZ3 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SYNE3Q6ZMZ3 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SYNE3Q6ZMZ3 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SYNE3Q6ZMZ3 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
SYNE3Q6ZMZ3 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
SYNE3Q6ZMZ3 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC20.74■□□□□ 0.91
SYNE3Q6ZMZ3 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC20.74■□□□□ 0.91
SYNE3Q6ZMZ3 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
SYNE3Q6ZMZ3 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
SYNE3Q6ZMZ3 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SYNE3Q6ZMZ3 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
SYNE3Q6ZMZ3 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SYNE3Q6ZMZ3 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC20.74■□□□□ 0.91
SYNE3Q6ZMZ3 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SYNE3Q6ZMZ3 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC20.74■□□□□ 0.91
SYNE3Q6ZMZ3 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SYNE3Q6ZMZ3 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC20.74■□□□□ 0.91
SYNE3Q6ZMZ3 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC20.74■□□□□ 0.91
SYNE3Q6ZMZ3 AC007967.3-201ENST00000434308 558 ntBASIC20.74■□□□□ 0.91
SYNE3Q6ZMZ3 MEG3-211ENST00000452514 461 ntTSL 3 BASIC20.74■□□□□ 0.91
SYNE3Q6ZMZ3 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
SYNE3Q6ZMZ3 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC20.74■□□□□ 0.91
SYNE3Q6ZMZ3 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC20.74■□□□□ 0.91
SYNE3Q6ZMZ3 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC20.74■□□□□ 0.91
SYNE3Q6ZMZ3 AC010460.3-201ENST00000511359 1579 ntBASIC20.74■□□□□ 0.91
SYNE3Q6ZMZ3 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC20.74■□□□□ 0.91
SYNE3Q6ZMZ3 AC012615.1-201ENST00000565797 1299 ntBASIC20.74■□□□□ 0.91
SYNE3Q6ZMZ3 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC20.74■□□□□ 0.91
SYNE3Q6ZMZ3 LINC01451-201ENST00000623792 534 ntBASIC20.74■□□□□ 0.91
SYNE3Q6ZMZ3 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC20.74■□□□□ 0.91
SYNE3Q6ZMZ3 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SYNE3Q6ZMZ3 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SYNE3Q6ZMZ3 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SYNE3Q6ZMZ3 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SYNE3Q6ZMZ3 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SYNE3Q6ZMZ3 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
SYNE3Q6ZMZ3 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SYNE3Q6ZMZ3 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC20.73■□□□□ 0.91
SYNE3Q6ZMZ3 NSUN5P1-202ENST00000421140 1535 ntBASIC20.73■□□□□ 0.91
SYNE3Q6ZMZ3 NSUN5P2-203ENST00000457352 1529 ntBASIC20.73■□□□□ 0.91
SYNE3Q6ZMZ3 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC20.73■□□□□ 0.91
SYNE3Q6ZMZ3 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC20.73■□□□□ 0.91
SYNE3Q6ZMZ3 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC20.73■□□□□ 0.91
SYNE3Q6ZMZ3 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC20.73■□□□□ 0.91
SYNE3Q6ZMZ3 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC20.73■□□□□ 0.91
SYNE3Q6ZMZ3 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SYNE3Q6ZMZ3 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SYNE3Q6ZMZ3 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SYNE3Q6ZMZ3 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SYNE3Q6ZMZ3 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SYNE3Q6ZMZ3 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC20.73■□□□□ 0.91
SYNE3Q6ZMZ3 PON3-205ENST00000451904 1053 ntTSL 3 BASIC20.73■□□□□ 0.91
SYNE3Q6ZMZ3 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC20.73■□□□□ 0.91
SYNE3Q6ZMZ3 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC20.73■□□□□ 0.91
SYNE3Q6ZMZ3 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC20.73■□□□□ 0.91
SYNE3Q6ZMZ3 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
SYNE3Q6ZMZ3 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SYNE3Q6ZMZ3 AL355312.1-201ENST00000407115 2176 ntBASIC20.73■□□□□ 0.91
SYNE3Q6ZMZ3 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
SYNE3Q6ZMZ3 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
SYNE3Q6ZMZ3 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SYNE3Q6ZMZ3 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SYNE3Q6ZMZ3 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
SYNE3Q6ZMZ3 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC20.73■□□□□ 0.91
SYNE3Q6ZMZ3 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SYNE3Q6ZMZ3 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
SYNE3Q6ZMZ3 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SYNE3Q6ZMZ3 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SYNE3Q6ZMZ3 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
SYNE3Q6ZMZ3 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC20.72■□□□□ 0.91
SYNE3Q6ZMZ3 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SYNE3Q6ZMZ3 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
SYNE3Q6ZMZ3 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
SYNE3Q6ZMZ3 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
SYNE3Q6ZMZ3 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC20.72■□□□□ 0.91
SYNE3Q6ZMZ3 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SYNE3Q6ZMZ3 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC20.72■□□□□ 0.91
SYNE3Q6ZMZ3 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms