Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CCDC88AQ3V6T2 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
CCDC88AQ3V6T2 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CCDC88AQ3V6T2 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC21.36■■□□□ 1.01
CCDC88AQ3V6T2 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CCDC88AQ3V6T2 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CCDC88AQ3V6T2 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CCDC88AQ3V6T2 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
CCDC88AQ3V6T2 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
CCDC88AQ3V6T2 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC21.36■■□□□ 1.01
CCDC88AQ3V6T2 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC21.36■■□□□ 1.01
CCDC88AQ3V6T2 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC21.36■■□□□ 1.01
CCDC88AQ3V6T2 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC21.36■■□□□ 1.01
CCDC88AQ3V6T2 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
CCDC88AQ3V6T2 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
CCDC88AQ3V6T2 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
CCDC88AQ3V6T2 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC21.36■■□□□ 1.01
CCDC88AQ3V6T2 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC21.36■■□□□ 1.01
CCDC88AQ3V6T2 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
CCDC88AQ3V6T2 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC21.36■■□□□ 1.01
CCDC88AQ3V6T2 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC21.36■■□□□ 1.01
CCDC88AQ3V6T2 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
CCDC88AQ3V6T2 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC21.36■■□□□ 1.01
CCDC88AQ3V6T2 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
CCDC88AQ3V6T2 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
CCDC88AQ3V6T2 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC21.35■■□□□ 1.01
CCDC88AQ3V6T2 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC21.35■■□□□ 1.01
CCDC88AQ3V6T2 CRB3P1-201ENST00000449338 276 ntBASIC21.35■■□□□ 1.01
CCDC88AQ3V6T2 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC21.35■■□□□ 1.01
CCDC88AQ3V6T2 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
CCDC88AQ3V6T2 SLC25A39P2-201ENST00000537614 270 ntBASIC21.35■■□□□ 1.01
CCDC88AQ3V6T2 MNT-208ENST00000575394 606 ntTSL 4 BASIC21.35■■□□□ 1.01
CCDC88AQ3V6T2 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CCDC88AQ3V6T2 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC21.35■■□□□ 1.01
CCDC88AQ3V6T2 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC21.35■■□□□ 1.01
CCDC88AQ3V6T2 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
CCDC88AQ3V6T2 HFE2-206ENST00000634927 506 ntTSL 4 BASIC21.35■■□□□ 1.01
CCDC88AQ3V6T2 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
CCDC88AQ3V6T2 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
CCDC88AQ3V6T2 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
CCDC88AQ3V6T2 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CCDC88AQ3V6T2 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
CCDC88AQ3V6T2 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC21.35■■□□□ 1.01
CCDC88AQ3V6T2 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
CCDC88AQ3V6T2 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC21.35■■□□□ 1.01
CCDC88AQ3V6T2 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CCDC88AQ3V6T2 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CCDC88AQ3V6T2 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
CCDC88AQ3V6T2 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
CCDC88AQ3V6T2 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CCDC88AQ3V6T2 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
CCDC88AQ3V6T2 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CCDC88AQ3V6T2 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CCDC88AQ3V6T2 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
CCDC88AQ3V6T2 NABP1-203ENST00000409510 843 ntTSL 5 BASIC21.35■■□□□ 1.01
CCDC88AQ3V6T2 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC21.35■■□□□ 1.01
CCDC88AQ3V6T2 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC21.35■■□□□ 1.01
CCDC88AQ3V6T2 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC21.35■■□□□ 1.01
CCDC88AQ3V6T2 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC21.35■■□□□ 1.01
CCDC88AQ3V6T2 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC21.35■■□□□ 1.01
CCDC88AQ3V6T2 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC21.35■■□□□ 1.01
CCDC88AQ3V6T2 DUT-210ENST00000559935 569 ntTSL 3 BASIC21.35■■□□□ 1.01
CCDC88AQ3V6T2 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC21.35■■□□□ 1.01
CCDC88AQ3V6T2 AC009949.1-201ENST00000623048 1830 ntBASIC21.34■■□□□ 1.01
CCDC88AQ3V6T2 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
CCDC88AQ3V6T2 AL590787.1-201ENST00000568856 1315 ntBASIC21.34■■□□□ 1.01
CCDC88AQ3V6T2 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
CCDC88AQ3V6T2 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC21.34■■□□□ 1.01
CCDC88AQ3V6T2 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
CCDC88AQ3V6T2 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CCDC88AQ3V6T2 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
CCDC88AQ3V6T2 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC21.34■■□□□ 1.01
CCDC88AQ3V6T2 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CCDC88AQ3V6T2 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CCDC88AQ3V6T2 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
CCDC88AQ3V6T2 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
CCDC88AQ3V6T2 FAM207CP-201ENST00000443486 507 ntBASIC21.34■■□□□ 1.01
CCDC88AQ3V6T2 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC21.34■■□□□ 1.01
CCDC88AQ3V6T2 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
CCDC88AQ3V6T2 DUTP2-201ENST00000519164 463 ntBASIC21.34■■□□□ 1.01
CCDC88AQ3V6T2 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC21.34■■□□□ 1.01
CCDC88AQ3V6T2 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CCDC88AQ3V6T2 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CCDC88AQ3V6T2 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CCDC88AQ3V6T2 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
CCDC88AQ3V6T2 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
CCDC88AQ3V6T2 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
CCDC88AQ3V6T2 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC21.34■■□□□ 1.01
CCDC88AQ3V6T2 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CCDC88AQ3V6T2 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC21.34■■□□□ 1.01
CCDC88AQ3V6T2 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1.01
CCDC88AQ3V6T2 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
CCDC88AQ3V6T2 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CCDC88AQ3V6T2 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CCDC88AQ3V6T2 TFAMP1-201ENST00000412727 736 ntBASIC21.33■■□□□ 1.01
CCDC88AQ3V6T2 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
CCDC88AQ3V6T2 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC21.33■■□□□ 1.01
CCDC88AQ3V6T2 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC21.33■■□□□ 1.01
CCDC88AQ3V6T2 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC21.33■■□□□ 1.01
CCDC88AQ3V6T2 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC21.33■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms