Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC18.47■□□□□ 0.55
CHD9Q3L8U1 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
CHD9Q3L8U1 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CHD9Q3L8U1 CALY-202ENST00000368555 783 ntTSL 2 BASIC18.47■□□□□ 0.55
CHD9Q3L8U1 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CHD9Q3L8U1 TMPRSS11CP-201ENST00000453277 683 ntBASIC18.47■□□□□ 0.55
CHD9Q3L8U1 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC18.47■□□□□ 0.55
CHD9Q3L8U1 AC026120.1-201ENST00000611536 926 ntBASIC18.47■□□□□ 0.55
CHD9Q3L8U1 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
CHD9Q3L8U1 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
CHD9Q3L8U1 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
CHD9Q3L8U1 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CHD9Q3L8U1 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
CHD9Q3L8U1 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
CHD9Q3L8U1 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
CHD9Q3L8U1 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC18.47■□□□□ 0.55
CHD9Q3L8U1 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
CHD9Q3L8U1 AC005237.2-201ENST00000434368 219 ntBASIC18.47■□□□□ 0.55
CHD9Q3L8U1 ATP5G2P4-201ENST00000442175 420 ntBASIC18.47■□□□□ 0.55
CHD9Q3L8U1 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC18.47■□□□□ 0.55
CHD9Q3L8U1 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC18.47■□□□□ 0.55
CHD9Q3L8U1 AC010336.2-201ENST00000564226 506 ntBASIC18.47■□□□□ 0.55
CHD9Q3L8U1 AL358472.5-202ENST00000641448 1267 ntBASIC18.47■□□□□ 0.55
CHD9Q3L8U1 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
CHD9Q3L8U1 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CHD9Q3L8U1 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CHD9Q3L8U1 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC18.46■□□□□ 0.55
CHD9Q3L8U1 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC18.46■□□□□ 0.55
CHD9Q3L8U1 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC18.46■□□□□ 0.55
CHD9Q3L8U1 AC004890.2-204ENST00000481968 304 ntBASIC18.46■□□□□ 0.55
CHD9Q3L8U1 FAM86C2P-203ENST00000528684 1004 ntBASIC18.46■□□□□ 0.55
CHD9Q3L8U1 AC027307.3-201ENST00000594262 1100 ntBASIC18.46■□□□□ 0.55
CHD9Q3L8U1 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CHD9Q3L8U1 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC18.46■□□□□ 0.55
CHD9Q3L8U1 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
CHD9Q3L8U1 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC18.46■□□□□ 0.55
CHD9Q3L8U1 PC-208ENST00000529047 1607 ntTSL 3 BASIC18.46■□□□□ 0.55
CHD9Q3L8U1 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CHD9Q3L8U1 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
CHD9Q3L8U1 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CHD9Q3L8U1 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC18.46■□□□□ 0.55
CHD9Q3L8U1 THTPA-204ENST00000554970 569 ntTSL 4 BASIC18.46■□□□□ 0.55
CHD9Q3L8U1 THTPA-206ENST00000556015 535 ntTSL 3 BASIC18.46■□□□□ 0.55
CHD9Q3L8U1 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC18.46■□□□□ 0.55
CHD9Q3L8U1 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CHD9Q3L8U1 AC109462.3-201ENST00000573934 613 ntBASIC18.46■□□□□ 0.55
CHD9Q3L8U1 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC18.46■□□□□ 0.55
CHD9Q3L8U1 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC18.46■□□□□ 0.55
CHD9Q3L8U1 IGHV3-72-202ENST00000621503 303 ntBASIC18.46■□□□□ 0.55
CHD9Q3L8U1 AL096828.2-201ENST00000567259 1965 ntBASIC18.46■□□□□ 0.55
CHD9Q3L8U1 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CHD9Q3L8U1 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC18.46■□□□□ 0.55
CHD9Q3L8U1 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CHD9Q3L8U1 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
CHD9Q3L8U1 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC18.46■□□□□ 0.54
CHD9Q3L8U1 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC18.45■□□□□ 0.54
CHD9Q3L8U1 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
CHD9Q3L8U1 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
CHD9Q3L8U1 AC079776.1-201ENST00000401540 1152 ntBASIC18.45■□□□□ 0.54
CHD9Q3L8U1 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC18.45■□□□□ 0.54
CHD9Q3L8U1 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CHD9Q3L8U1 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC18.45■□□□□ 0.54
CHD9Q3L8U1 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CHD9Q3L8U1 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
CHD9Q3L8U1 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC18.45■□□□□ 0.54
CHD9Q3L8U1 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CHD9Q3L8U1 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC18.45■□□□□ 0.54
CHD9Q3L8U1 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CHD9Q3L8U1 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CHD9Q3L8U1 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CHD9Q3L8U1 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CHD9Q3L8U1 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CHD9Q3L8U1 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
CHD9Q3L8U1 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CHD9Q3L8U1 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC18.45■□□□□ 0.54
CHD9Q3L8U1 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CHD9Q3L8U1 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
CHD9Q3L8U1 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC18.45■□□□□ 0.54
CHD9Q3L8U1 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
CHD9Q3L8U1 CD81-202ENST00000381036 880 ntTSL 3 BASIC18.45■□□□□ 0.54
CHD9Q3L8U1 ACTG1P4-201ENST00000425123 1122 ntBASIC18.45■□□□□ 0.54
CHD9Q3L8U1 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
CHD9Q3L8U1 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CHD9Q3L8U1 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CHD9Q3L8U1 HILS1-202ENST00000545329 423 ntBASIC18.45■□□□□ 0.54
CHD9Q3L8U1 AL132655.2-201ENST00000596276 594 ntBASIC18.45■□□□□ 0.54
CHD9Q3L8U1 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC18.45■□□□□ 0.54
CHD9Q3L8U1 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CHD9Q3L8U1 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CHD9Q3L8U1 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
CHD9Q3L8U1 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
CHD9Q3L8U1 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
CHD9Q3L8U1 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
CHD9Q3L8U1 SLC25A39P2-201ENST00000537614 270 ntBASIC18.44■□□□□ 0.54
CHD9Q3L8U1 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC18.44■□□□□ 0.54
CHD9Q3L8U1 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC18.44■□□□□ 0.54
CHD9Q3L8U1 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC18.44■□□□□ 0.54
CHD9Q3L8U1 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC18.44■□□□□ 0.54
CHD9Q3L8U1 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC18.44■□□□□ 0.54
CHD9Q3L8U1 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms