Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
COL4A4P53420 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL4A4P53420 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL4A4P53420 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COL4A4P53420 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC18.68■□□□□ 0.58
COL4A4P53420 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC18.68■□□□□ 0.58
COL4A4P53420 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC18.68■□□□□ 0.58
COL4A4P53420 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL4A4P53420 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC18.68■□□□□ 0.58
COL4A4P53420 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COL4A4P53420 NEFHP1-201ENST00000412845 2629 ntBASIC18.68■□□□□ 0.58
COL4A4P53420 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL4A4P53420 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL4A4P53420 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COL4A4P53420 MIR661-201ENST00000384842 89 ntBASIC18.68■□□□□ 0.58
COL4A4P53420 METTL26-204ENST00000397665 558 ntTSL 2 BASIC18.68■□□□□ 0.58
COL4A4P53420 AL627223.1-201ENST00000416693 442 ntBASIC18.68■□□□□ 0.58
COL4A4P53420 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC18.68■□□□□ 0.58
COL4A4P53420 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC18.68■□□□□ 0.58
COL4A4P53420 AQP6-203ENST00000551733 849 ntTSL 3 BASIC18.68■□□□□ 0.58
COL4A4P53420 MNT-208ENST00000575394 606 ntTSL 4 BASIC18.68■□□□□ 0.58
COL4A4P53420 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC18.68■□□□□ 0.58
COL4A4P53420 OR7E47P-204ENST00000575924 449 ntBASIC18.68■□□□□ 0.58
COL4A4P53420 MIR4745-201ENST00000577608 62 ntBASIC18.68■□□□□ 0.58
COL4A4P53420 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC18.68■□□□□ 0.58
COL4A4P53420 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC18.68■□□□□ 0.58
COL4A4P53420 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
COL4A4P53420 KRT18P55-202ENST00000578578 1546 ntBASIC18.68■□□□□ 0.58
COL4A4P53420 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL4A4P53420 BSG-215ENST00000618006 1329 ntTSL 2 BASIC18.68■□□□□ 0.58
COL4A4P53420 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
COL4A4P53420 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL4A4P53420 AC006116.8-202ENST00000587620 1550 ntBASIC18.68■□□□□ 0.58
COL4A4P53420 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL4A4P53420 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC18.68■□□□□ 0.58
COL4A4P53420 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC18.68■□□□□ 0.58
COL4A4P53420 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC18.67■□□□□ 0.58
COL4A4P53420 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC18.67■□□□□ 0.58
COL4A4P53420 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL4A4P53420 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC18.67■□□□□ 0.58
COL4A4P53420 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC18.67■□□□□ 0.58
COL4A4P53420 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC18.67■□□□□ 0.58
COL4A4P53420 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL4A4P53420 AC005034.1-201ENST00000426657 489 ntBASIC18.67■□□□□ 0.58
COL4A4P53420 SIGLEC30P-201ENST00000455569 941 ntBASIC18.67■□□□□ 0.58
COL4A4P53420 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC18.67■□□□□ 0.58
COL4A4P53420 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC18.67■□□□□ 0.58
COL4A4P53420 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC18.67■□□□□ 0.58
COL4A4P53420 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
COL4A4P53420 MED16-214ENST00000617672 554 ntTSL 5 BASIC18.67■□□□□ 0.58
COL4A4P53420 LINC00628-201ENST00000628516 1289 ntBASIC18.67■□□□□ 0.58
COL4A4P53420 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC18.67■□□□□ 0.58
COL4A4P53420 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL4A4P53420 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
COL4A4P53420 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
COL4A4P53420 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC18.67■□□□□ 0.58
COL4A4P53420 AC092919.2-201ENST00000623631 1645 ntBASIC18.67■□□□□ 0.58
COL4A4P53420 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL4A4P53420 AP000997.3-201ENST00000623333 2250 ntBASIC18.67■□□□□ 0.58
COL4A4P53420 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
COL4A4P53420 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC18.67■□□□□ 0.58
COL4A4P53420 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
COL4A4P53420 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL4A4P53420 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC18.66■□□□□ 0.58
COL4A4P53420 AP002414.1-201ENST00000391405 1147 ntBASIC18.66■□□□□ 0.58
COL4A4P53420 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC18.66■□□□□ 0.58
COL4A4P53420 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC18.66■□□□□ 0.58
COL4A4P53420 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC18.66■□□□□ 0.58
COL4A4P53420 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC18.66■□□□□ 0.58
COL4A4P53420 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
COL4A4P53420 AC004835.2-201ENST00000603762 682 ntBASIC18.66■□□□□ 0.58
COL4A4P53420 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC18.66■□□□□ 0.58
COL4A4P53420 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
COL4A4P53420 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
COL4A4P53420 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL4A4P53420 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL4A4P53420 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC18.66■□□□□ 0.58
COL4A4P53420 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC18.66■□□□□ 0.58
COL4A4P53420 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL4A4P53420 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL4A4P53420 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL4A4P53420 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC18.66■□□□□ 0.58
COL4A4P53420 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL4A4P53420 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL4A4P53420 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC18.66■□□□□ 0.58
COL4A4P53420 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL4A4P53420 BAD-202ENST00000394531 631 ntTSL 3 BASIC18.66■□□□□ 0.58
COL4A4P53420 KRT18P32-201ENST00000424695 1287 ntBASIC18.66■□□□□ 0.58
COL4A4P53420 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC18.66■□□□□ 0.58
COL4A4P53420 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL4A4P53420 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC18.66■□□□□ 0.58
COL4A4P53420 AC093520.2-201ENST00000561830 333 ntBASIC18.66■□□□□ 0.58
COL4A4P53420 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC18.66■□□□□ 0.58
COL4A4P53420 AC019129.2-201ENST00000609837 1235 ntBASIC18.66■□□□□ 0.58
COL4A4P53420 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL4A4P53420 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL4A4P53420 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL4A4P53420 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
COL4A4P53420 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL4A4P53420 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms