Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
LIG3P49916 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC18.56■□□□□ 0.56
LIG3P49916 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC18.56■□□□□ 0.56
LIG3P49916 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC18.56■□□□□ 0.56
LIG3P49916 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC18.56■□□□□ 0.56
LIG3P49916 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC18.56■□□□□ 0.56
LIG3P49916 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
LIG3P49916 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC18.56■□□□□ 0.56
LIG3P49916 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
LIG3P49916 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
LIG3P49916 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC18.56■□□□□ 0.56
LIG3P49916 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC18.56■□□□□ 0.56
LIG3P49916 FGF14-AS2-201ENST00000606448 1074 ntBASIC18.56■□□□□ 0.56
LIG3P49916 AL121956.5-201ENST00000625261 221 ntBASIC18.56■□□□□ 0.56
LIG3P49916 AL157888.1-201ENST00000631930 593 ntBASIC18.56■□□□□ 0.56
LIG3P49916 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
LIG3P49916 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
LIG3P49916 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
LIG3P49916 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
LIG3P49916 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC18.56■□□□□ 0.56
LIG3P49916 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
LIG3P49916 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
LIG3P49916 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
LIG3P49916 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC18.56■□□□□ 0.56
LIG3P49916 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
LIG3P49916 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
LIG3P49916 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
LIG3P49916 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
LIG3P49916 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
LIG3P49916 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
LIG3P49916 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
LIG3P49916 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
LIG3P49916 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
LIG3P49916 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
LIG3P49916 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
LIG3P49916 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
LIG3P49916 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
LIG3P49916 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
LIG3P49916 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
LIG3P49916 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
LIG3P49916 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC18.55■□□□□ 0.56
LIG3P49916 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC18.55■□□□□ 0.56
LIG3P49916 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC18.55■□□□□ 0.56
LIG3P49916 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC18.55■□□□□ 0.56
LIG3P49916 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
LIG3P49916 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
LIG3P49916 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
LIG3P49916 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
LIG3P49916 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
LIG3P49916 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC18.55■□□□□ 0.56
LIG3P49916 AC092597.1-201ENST00000487352 616 ntBASIC18.55■□□□□ 0.56
LIG3P49916 LY6E-213ENST00000522528 606 ntTSL 3 BASIC18.55■□□□□ 0.56
LIG3P49916 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC18.55■□□□□ 0.56
LIG3P49916 CD320-202ENST00000537716 1119 ntTSL 2 BASIC18.55■□□□□ 0.56
LIG3P49916 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
LIG3P49916 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC18.55■□□□□ 0.56
LIG3P49916 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
LIG3P49916 AC010240.3-201ENST00000607688 395 ntBASIC18.55■□□□□ 0.56
LIG3P49916 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC18.55■□□□□ 0.56
LIG3P49916 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC18.55■□□□□ 0.56
LIG3P49916 AC083849.1-201ENST00000615227 514 ntBASIC18.55■□□□□ 0.56
LIG3P49916 AL358472.4-201ENST00000633140 710 ntBASIC18.55■□□□□ 0.56
LIG3P49916 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
LIG3P49916 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
LIG3P49916 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC18.55■□□□□ 0.56
LIG3P49916 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
LIG3P49916 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
LIG3P49916 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
LIG3P49916 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC18.55■□□□□ 0.56
LIG3P49916 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC18.55■□□□□ 0.56
LIG3P49916 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
LIG3P49916 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC18.55■□□□□ 0.56
LIG3P49916 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
LIG3P49916 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
LIG3P49916 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC18.54■□□□□ 0.56
LIG3P49916 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
LIG3P49916 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
LIG3P49916 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
LIG3P49916 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
LIG3P49916 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
LIG3P49916 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC18.54■□□□□ 0.56
LIG3P49916 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
LIG3P49916 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
LIG3P49916 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
LIG3P49916 DAP-202ENST00000432074 1048 ntTSL 2 BASIC18.54■□□□□ 0.56
LIG3P49916 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
LIG3P49916 FAM86EP-206ENST00000510506 987 ntBASIC18.54■□□□□ 0.56
LIG3P49916 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC18.54■□□□□ 0.56
LIG3P49916 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC18.54■□□□□ 0.56
LIG3P49916 NAT14-202ENST00000587400 416 ntTSL 5 BASIC18.54■□□□□ 0.56
LIG3P49916 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC18.54■□□□□ 0.56
LIG3P49916 NARF-204ENST00000390006 1766 ntTSL 2 BASIC18.54■□□□□ 0.56
LIG3P49916 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC18.54■□□□□ 0.56
LIG3P49916 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC18.54■□□□□ 0.56
LIG3P49916 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
LIG3P49916 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC18.54■□□□□ 0.56
LIG3P49916 HYMAI-201ENST00000635591 3347 ntBASIC18.54■□□□□ 0.56
LIG3P49916 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
LIG3P49916 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
LIG3P49916 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms