Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PTPN9P43378 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PTPN9P43378 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
PTPN9P43378 THAP5-204ENST00000438865 868 ntTSL 2 BASIC18.29■□□□□ 0.52
PTPN9P43378 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
PTPN9P43378 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PTPN9P43378 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC18.29■□□□□ 0.52
PTPN9P43378 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC18.29■□□□□ 0.52
PTPN9P43378 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC18.29■□□□□ 0.52
PTPN9P43378 GZMM-202ENST00000592501 941 ntTSL 3 BASIC18.29■□□□□ 0.52
PTPN9P43378 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
PTPN9P43378 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC18.29■□□□□ 0.52
PTPN9P43378 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC18.29■□□□□ 0.52
PTPN9P43378 LTB4R2-202ENST00000528054 3092 ntBASIC18.29■□□□□ 0.52
PTPN9P43378 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PTPN9P43378 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC18.29■□□□□ 0.52
PTPN9P43378 CROCCP2-202ENST00000412962 2773 ntBASIC18.29■□□□□ 0.52
PTPN9P43378 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PTPN9P43378 AL645608.8-201ENST00000606034 2086 ntBASIC18.29■□□□□ 0.52
PTPN9P43378 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
PTPN9P43378 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
PTPN9P43378 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
PTPN9P43378 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PTPN9P43378 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PTPN9P43378 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
PTPN9P43378 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
PTPN9P43378 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PTPN9P43378 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PTPN9P43378 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
PTPN9P43378 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
PTPN9P43378 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC18.28■□□□□ 0.52
PTPN9P43378 ENSA-206ENST00000361631 725 ntTSL 2 BASIC18.28■□□□□ 0.52
PTPN9P43378 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PTPN9P43378 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC18.28■□□□□ 0.52
PTPN9P43378 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC18.28■□□□□ 0.52
PTPN9P43378 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
PTPN9P43378 AC138894.3-201ENST00000603787 634 ntBASIC18.28■□□□□ 0.52
PTPN9P43378 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC18.28■□□□□ 0.52
PTPN9P43378 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PTPN9P43378 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
PTPN9P43378 PMPCAP1-201ENST00000508114 1576 ntBASIC18.28■□□□□ 0.52
PTPN9P43378 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
PTPN9P43378 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
PTPN9P43378 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
PTPN9P43378 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
PTPN9P43378 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
PTPN9P43378 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PTPN9P43378 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC18.28■□□□□ 0.52
PTPN9P43378 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
PTPN9P43378 AC132938.5-201ENST00000624980 1813 ntBASIC18.28■□□□□ 0.52
PTPN9P43378 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC18.28■□□□□ 0.52
PTPN9P43378 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
PTPN9P43378 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
PTPN9P43378 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC18.27■□□□□ 0.52
PTPN9P43378 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PTPN9P43378 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
PTPN9P43378 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
PTPN9P43378 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PTPN9P43378 AL023806.1-201ENST00000603994 1649 ntBASIC18.27■□□□□ 0.52
PTPN9P43378 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
PTPN9P43378 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
PTPN9P43378 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC18.27■□□□□ 0.52
PTPN9P43378 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PTPN9P43378 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
PTPN9P43378 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PTPN9P43378 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PTPN9P43378 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PTPN9P43378 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
PTPN9P43378 AC003669.1-201ENST00000334569 611 ntBASIC18.27■□□□□ 0.52
PTPN9P43378 FUOM-202ENST00000368551 628 ntTSL 3 BASIC18.27■□□□□ 0.52
PTPN9P43378 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PTPN9P43378 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC18.27■□□□□ 0.52
PTPN9P43378 FOSL1P1-201ENST00000511041 816 ntBASIC18.27■□□□□ 0.52
PTPN9P43378 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC18.27■□□□□ 0.52
PTPN9P43378 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC18.27■□□□□ 0.52
PTPN9P43378 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC18.27■□□□□ 0.52
PTPN9P43378 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC18.27■□□□□ 0.52
PTPN9P43378 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PTPN9P43378 IGHV3OR16-7-201ENST00000604106 360 ntBASIC18.27■□□□□ 0.52
PTPN9P43378 AP000867.4-201ENST00000641616 219 ntBASIC18.27■□□□□ 0.52
PTPN9P43378 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PTPN9P43378 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PTPN9P43378 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PTPN9P43378 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC18.27■□□□□ 0.52
PTPN9P43378 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
PTPN9P43378 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
PTPN9P43378 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC18.27■□□□□ 0.52
PTPN9P43378 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PTPN9P43378 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
PTPN9P43378 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
PTPN9P43378 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
PTPN9P43378 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.51
PTPN9P43378 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.51
PTPN9P43378 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC18.27■□□□□ 0.51
PTPN9P43378 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC18.27■□□□□ 0.51
PTPN9P43378 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
PTPN9P43378 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
PTPN9P43378 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PTPN9P43378 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC18.26■□□□□ 0.51
PTPN9P43378 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC18.26■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms