Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC17.1■□□□□ 0.33
HNF4AP41235 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HNF4AP41235 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
HNF4AP41235 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HNF4AP41235 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC17.1■□□□□ 0.33
HNF4AP41235 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HNF4AP41235 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HNF4AP41235 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HNF4AP41235 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HNF4AP41235 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC17.1■□□□□ 0.33
HNF4AP41235 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HNF4AP41235 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
HNF4AP41235 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HNF4AP41235 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
HNF4AP41235 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HNF4AP41235 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC17.1■□□□□ 0.33
HNF4AP41235 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC17.1■□□□□ 0.33
HNF4AP41235 TSSC2-201ENST00000450217 709 ntBASIC17.1■□□□□ 0.33
HNF4AP41235 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
HNF4AP41235 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC17.1■□□□□ 0.33
HNF4AP41235 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HNF4AP41235 AL592071.1-201ENST00000611956 408 ntBASIC17.1■□□□□ 0.33
HNF4AP41235 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
HNF4AP41235 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC17.1■□□□□ 0.33
HNF4AP41235 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC17.1■□□□□ 0.33
HNF4AP41235 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
HNF4AP41235 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC17.1■□□□□ 0.33
HNF4AP41235 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
HNF4AP41235 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC17.1■□□□□ 0.33
HNF4AP41235 TBC1D3P5-201ENST00000579401 1545 ntBASIC17.1■□□□□ 0.33
HNF4AP41235 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
HNF4AP41235 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
HNF4AP41235 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC17.1■□□□□ 0.33
HNF4AP41235 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
HNF4AP41235 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
HNF4AP41235 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
HNF4AP41235 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC17.1■□□□□ 0.33
HNF4AP41235 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HNF4AP41235 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HNF4AP41235 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
HNF4AP41235 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
HNF4AP41235 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
HNF4AP41235 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HNF4AP41235 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
HNF4AP41235 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HNF4AP41235 CHCHD2P8-201ENST00000429873 447 ntBASIC17.09■□□□□ 0.33
HNF4AP41235 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HNF4AP41235 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HNF4AP41235 AC090616.6-201ENST00000582640 721 ntBASIC17.09■□□□□ 0.33
HNF4AP41235 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
HNF4AP41235 KRT18P1-202ENST00000452408 1331 ntBASIC17.09■□□□□ 0.33
HNF4AP41235 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
HNF4AP41235 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC17.09■□□□□ 0.33
HNF4AP41235 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HNF4AP41235 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HNF4AP41235 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC17.09■□□□□ 0.33
HNF4AP41235 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HNF4AP41235 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HNF4AP41235 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC17.09■□□□□ 0.33
HNF4AP41235 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
HNF4AP41235 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC17.09■□□□□ 0.33
HNF4AP41235 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HNF4AP41235 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
HNF4AP41235 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC17.09■□□□□ 0.33
HNF4AP41235 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HNF4AP41235 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
HNF4AP41235 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HNF4AP41235 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
HNF4AP41235 FST-202ENST00000396947 2538 ntTSL 5 BASIC17.09■□□□□ 0.33
HNF4AP41235 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HNF4AP41235 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC17.09■□□□□ 0.33
HNF4AP41235 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
HNF4AP41235 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
HNF4AP41235 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC17.09■□□□□ 0.33
HNF4AP41235 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HNF4AP41235 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
HNF4AP41235 AC106820.2-201ENST00000563775 3264 ntBASIC17.08■□□□□ 0.33
HNF4AP41235 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
HNF4AP41235 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
HNF4AP41235 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC17.08■□□□□ 0.33
HNF4AP41235 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC17.08■□□□□ 0.33
HNF4AP41235 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.33
HNF4AP41235 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
HNF4AP41235 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
HNF4AP41235 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
HNF4AP41235 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
HNF4AP41235 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
HNF4AP41235 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HNF4AP41235 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC17.08■□□□□ 0.32
HNF4AP41235 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
HNF4AP41235 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC17.08■□□□□ 0.32
HNF4AP41235 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HNF4AP41235 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HNF4AP41235 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
HNF4AP41235 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
HNF4AP41235 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HNF4AP41235 AC005104.2-201ENST00000427818 678 ntBASIC17.08■□□□□ 0.32
HNF4AP41235 UPK3BP1-201ENST00000428678 509 ntBASIC17.08■□□□□ 0.32
HNF4AP41235 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC17.08■□□□□ 0.32
HNF4AP41235 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC17.08■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms