Protein–RNA interactions for Protein: P35398

RORA, Nuclear receptor ROR-alpha, humanhuman

Predictions only

Length 523 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RORAP35398 AC073592.4-201ENST00000623827 446 ntBASIC16.74■□□□□ 0.27
RORAP35398 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC16.74■□□□□ 0.27
RORAP35398 AL390961.4-201ENST00000623958 2535 ntBASIC16.74■□□□□ 0.27
RORAP35398 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
RORAP35398 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC16.74■□□□□ 0.27
RORAP35398 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
RORAP35398 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
RORAP35398 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
RORAP35398 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
RORAP35398 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
RORAP35398 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
RORAP35398 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
RORAP35398 AC079776.2-201ENST00000641154 1609 ntBASIC16.74■□□□□ 0.27
RORAP35398 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC16.74■□□□□ 0.27
RORAP35398 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
RORAP35398 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
RORAP35398 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
RORAP35398 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC16.74■□□□□ 0.27
RORAP35398 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
RORAP35398 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
RORAP35398 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
RORAP35398 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
RORAP35398 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
RORAP35398 AC138028.4-201ENST00000564984 1845 ntBASIC16.73■□□□□ 0.27
RORAP35398 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
RORAP35398 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC16.73■□□□□ 0.27
RORAP35398 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
RORAP35398 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC16.73■□□□□ 0.27
RORAP35398 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
RORAP35398 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC16.73■□□□□ 0.27
RORAP35398 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
RORAP35398 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC16.73■□□□□ 0.27
RORAP35398 OR7E14P-202ENST00000530490 1290 ntBASIC16.73■□□□□ 0.27
RORAP35398 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
RORAP35398 RPL18-209ENST00000550645 463 ntTSL 5 BASIC16.73■□□□□ 0.27
RORAP35398 RPL18-214ENST00000552588 559 ntTSL 3 BASIC16.73■□□□□ 0.27
RORAP35398 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC16.73■□□□□ 0.27
RORAP35398 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC16.73■□□□□ 0.27
RORAP35398 AC106730.1-201ENST00000566722 1090 ntBASIC16.73■□□□□ 0.27
RORAP35398 MTDHP4-201ENST00000600287 670 ntBASIC16.73■□□□□ 0.27
RORAP35398 AC023511.2-201ENST00000618803 211 ntBASIC16.73■□□□□ 0.27
RORAP35398 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC16.73■□□□□ 0.27
RORAP35398 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
RORAP35398 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
RORAP35398 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
RORAP35398 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
RORAP35398 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
RORAP35398 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
RORAP35398 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
RORAP35398 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
RORAP35398 NOC2LP1-202ENST00000452600 2235 ntBASIC16.73■□□□□ 0.27
RORAP35398 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
RORAP35398 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
RORAP35398 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC16.73■□□□□ 0.27
RORAP35398 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
RORAP35398 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC16.73■□□□□ 0.27
RORAP35398 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
RORAP35398 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
RORAP35398 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC16.72■□□□□ 0.27
RORAP35398 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
RORAP35398 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
RORAP35398 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
RORAP35398 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
RORAP35398 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC16.72■□□□□ 0.27
RORAP35398 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
RORAP35398 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
RORAP35398 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
RORAP35398 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
RORAP35398 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC16.72■□□□□ 0.27
RORAP35398 AC103564.2-201ENST00000432853 1299 ntBASIC16.72■□□□□ 0.27
RORAP35398 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC16.72■□□□□ 0.27
RORAP35398 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC16.72■□□□□ 0.27
RORAP35398 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC16.72■□□□□ 0.27
RORAP35398 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC16.72■□□□□ 0.27
RORAP35398 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
RORAP35398 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC16.72■□□□□ 0.27
RORAP35398 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
RORAP35398 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
RORAP35398 MED29-202ENST00000594368 1471 ntTSL 2 BASIC16.72■□□□□ 0.27
RORAP35398 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
RORAP35398 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
RORAP35398 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC16.72■□□□□ 0.27
RORAP35398 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
RORAP35398 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
RORAP35398 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC16.72■□□□□ 0.27
RORAP35398 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
RORAP35398 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC16.71■□□□□ 0.27
RORAP35398 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
RORAP35398 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
RORAP35398 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
RORAP35398 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
RORAP35398 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC16.71■□□□□ 0.27
RORAP35398 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
RORAP35398 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
RORAP35398 ADM-208ENST00000534464 1640 ntTSL 2 BASIC16.71■□□□□ 0.27
RORAP35398 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
RORAP35398 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
RORAP35398 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC16.71■□□□□ 0.27
RORAP35398 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
RORAP35398 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms