Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
BDNFP23560 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
BDNFP23560 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC18.56■□□□□ 0.56
BDNFP23560 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
BDNFP23560 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
BDNFP23560 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
BDNFP23560 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
BDNFP23560 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
BDNFP23560 KLF4P1-201ENST00000412782 1185 ntBASIC18.56■□□□□ 0.56
BDNFP23560 AP000347.1-202ENST00000435868 847 ntBASIC18.56■□□□□ 0.56
BDNFP23560 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC18.56■□□□□ 0.56
BDNFP23560 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC18.56■□□□□ 0.56
BDNFP23560 MIR7706-201ENST00000613747 67 ntBASIC18.56■□□□□ 0.56
BDNFP23560 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC18.56■□□□□ 0.56
BDNFP23560 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC18.56■□□□□ 0.56
BDNFP23560 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC18.56■□□□□ 0.56
BDNFP23560 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
BDNFP23560 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
BDNFP23560 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
BDNFP23560 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
BDNFP23560 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
BDNFP23560 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC18.56■□□□□ 0.56
BDNFP23560 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC18.56■□□□□ 0.56
BDNFP23560 SIGLEC16-201ENST00000599858 1437 ntBASIC18.56■□□□□ 0.56
BDNFP23560 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC18.56■□□□□ 0.56
BDNFP23560 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC18.56■□□□□ 0.56
BDNFP23560 AC148477.5-201ENST00000625164 1645 ntBASIC18.56■□□□□ 0.56
BDNFP23560 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC18.55■□□□□ 0.56
BDNFP23560 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
BDNFP23560 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC18.55■□□□□ 0.56
BDNFP23560 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC18.55■□□□□ 0.56
BDNFP23560 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC18.55■□□□□ 0.56
BDNFP23560 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
BDNFP23560 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
BDNFP23560 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC18.55■□□□□ 0.56
BDNFP23560 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC18.55■□□□□ 0.56
BDNFP23560 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
BDNFP23560 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC18.55■□□□□ 0.56
BDNFP23560 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
BDNFP23560 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC18.55■□□□□ 0.56
BDNFP23560 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC18.55■□□□□ 0.56
BDNFP23560 AL590627.1-203ENST00000421194 1026 ntBASIC18.55■□□□□ 0.56
BDNFP23560 AL020989.1-201ENST00000422979 469 ntBASIC18.55■□□□□ 0.56
BDNFP23560 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC18.55■□□□□ 0.56
BDNFP23560 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC18.55■□□□□ 0.56
BDNFP23560 OR7E14P-202ENST00000530490 1290 ntBASIC18.55■□□□□ 0.56
BDNFP23560 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC18.55■□□□□ 0.56
BDNFP23560 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
BDNFP23560 RNF151-202ENST00000569210 853 ntTSL 2 BASIC18.55■□□□□ 0.56
BDNFP23560 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC18.55■□□□□ 0.56
BDNFP23560 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC18.55■□□□□ 0.56
BDNFP23560 AL022326.1-202ENST00000641533 845 ntBASIC18.55■□□□□ 0.56
BDNFP23560 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
BDNFP23560 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
BDNFP23560 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
BDNFP23560 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC18.55■□□□□ 0.56
BDNFP23560 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC18.55■□□□□ 0.56
BDNFP23560 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
BDNFP23560 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC18.55■□□□□ 0.56
BDNFP23560 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
BDNFP23560 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
BDNFP23560 AC243591.1-201ENST00000452967 1364 ntBASIC18.55■□□□□ 0.56
BDNFP23560 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC18.54■□□□□ 0.56
BDNFP23560 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
BDNFP23560 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
BDNFP23560 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
BDNFP23560 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC18.54■□□□□ 0.56
BDNFP23560 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
BDNFP23560 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
BDNFP23560 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
BDNFP23560 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
BDNFP23560 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
BDNFP23560 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
BDNFP23560 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
BDNFP23560 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
BDNFP23560 RPS2P28-201ENST00000314255 741 ntBASIC18.54■□□□□ 0.56
BDNFP23560 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
BDNFP23560 NME9-203ENST00000383180 2133 ntTSL 2 BASIC18.54■□□□□ 0.56
BDNFP23560 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
BDNFP23560 AC002558.1-201ENST00000488906 803 ntBASIC18.54■□□□□ 0.56
BDNFP23560 AC093909.1-201ENST00000504731 1122 ntBASIC18.54■□□□□ 0.56
BDNFP23560 MSRA-206ENST00000521209 814 ntTSL 3 BASIC18.54■□□□□ 0.56
BDNFP23560 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
BDNFP23560 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC18.54■□□□□ 0.56
BDNFP23560 STK25P1-201ENST00000585406 838 ntBASIC18.54■□□□□ 0.56
BDNFP23560 COPE-211ENST00000600932 1144 ntTSL 5 BASIC18.54■□□□□ 0.56
BDNFP23560 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC18.54■□□□□ 0.56
BDNFP23560 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC18.54■□□□□ 0.56
BDNFP23560 PRKN-208ENST00000610470 531 ntTSL 2 BASIC18.54■□□□□ 0.56
BDNFP23560 AC120114.3-201ENST00000611923 658 ntBASIC18.54■□□□□ 0.56
BDNFP23560 PRKN-209ENST00000612485 225 ntTSL 5 BASIC18.54■□□□□ 0.56
BDNFP23560 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
BDNFP23560 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
BDNFP23560 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
BDNFP23560 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
BDNFP23560 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC18.54■□□□□ 0.56
BDNFP23560 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
BDNFP23560 AC026471.1-201ENST00000564629 3026 ntBASIC18.54■□□□□ 0.56
BDNFP23560 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
BDNFP23560 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 46.6 ms