Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC17.23■□□□□ 0.35
SIX3O95343 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SIX3O95343 AC005104.2-201ENST00000427818 678 ntBASIC17.23■□□□□ 0.35
SIX3O95343 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC17.23■□□□□ 0.35
SIX3O95343 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC17.23■□□□□ 0.35
SIX3O95343 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC17.23■□□□□ 0.35
SIX3O95343 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC17.23■□□□□ 0.35
SIX3O95343 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SIX3O95343 AC083849.1-201ENST00000615227 514 ntBASIC17.23■□□□□ 0.35
SIX3O95343 ANKRD20A8P-203ENST00000641373 517 ntBASIC17.23■□□□□ 0.35
SIX3O95343 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
SIX3O95343 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
SIX3O95343 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
SIX3O95343 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SIX3O95343 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SIX3O95343 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
SIX3O95343 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SIX3O95343 NKILA-202ENST00000614771 2598 ntBASIC17.23■□□□□ 0.35
SIX3O95343 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
SIX3O95343 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
SIX3O95343 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SIX3O95343 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SIX3O95343 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SIX3O95343 AC011676.5-201ENST00000624864 2660 ntBASIC17.23■□□□□ 0.35
SIX3O95343 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC17.23■□□□□ 0.35
SIX3O95343 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
SIX3O95343 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
SIX3O95343 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SIX3O95343 UBC-206ENST00000538617 1303 ntTSL 5 BASIC17.22■□□□□ 0.35
SIX3O95343 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
SIX3O95343 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC17.22■□□□□ 0.35
SIX3O95343 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SIX3O95343 AC084018.2-201ENST00000613093 2607 ntBASIC17.22■□□□□ 0.35
SIX3O95343 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SIX3O95343 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
SIX3O95343 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SIX3O95343 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SIX3O95343 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
SIX3O95343 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SIX3O95343 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SIX3O95343 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SIX3O95343 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SIX3O95343 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SIX3O95343 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SIX3O95343 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SIX3O95343 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC17.22■□□□□ 0.35
SIX3O95343 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
SIX3O95343 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SIX3O95343 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC17.22■□□□□ 0.35
SIX3O95343 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SIX3O95343 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SIX3O95343 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC17.22■□□□□ 0.35
SIX3O95343 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SIX3O95343 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
SIX3O95343 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC17.22■□□□□ 0.35
SIX3O95343 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC17.22■□□□□ 0.35
SIX3O95343 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC17.22■□□□□ 0.35
SIX3O95343 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
SIX3O95343 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
SIX3O95343 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC17.22■□□□□ 0.35
SIX3O95343 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SIX3O95343 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SIX3O95343 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SIX3O95343 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SIX3O95343 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC17.21■□□□□ 0.35
SIX3O95343 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
SIX3O95343 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC17.21■□□□□ 0.35
SIX3O95343 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
SIX3O95343 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SIX3O95343 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SIX3O95343 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
SIX3O95343 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SIX3O95343 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
SIX3O95343 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
SIX3O95343 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SIX3O95343 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SIX3O95343 AC010460.3-201ENST00000511359 1579 ntBASIC17.21■□□□□ 0.35
SIX3O95343 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SIX3O95343 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SIX3O95343 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC17.21■□□□□ 0.35
SIX3O95343 AC063952.2-201ENST00000498792 1227 ntBASIC17.21■□□□□ 0.35
SIX3O95343 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SIX3O95343 LY6E-213ENST00000522528 606 ntTSL 3 BASIC17.21■□□□□ 0.35
SIX3O95343 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC17.21■□□□□ 0.35
SIX3O95343 TMED1-207ENST00000591695 809 ntTSL 5 BASIC17.21■□□□□ 0.35
SIX3O95343 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
SIX3O95343 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC17.21■□□□□ 0.35
SIX3O95343 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
SIX3O95343 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
SIX3O95343 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC17.21■□□□□ 0.35
SIX3O95343 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
SIX3O95343 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
SIX3O95343 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC17.21■□□□□ 0.35
SIX3O95343 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC17.21■□□□□ 0.34
SIX3O95343 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SIX3O95343 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SIX3O95343 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
SIX3O95343 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
SIX3O95343 PKD1P1-201ENST00000458669 6805 ntBASIC17.2■□□□□ 0.34
SIX3O95343 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 68.5 ms