Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC15.78■□□□□ 0.12
COL6A6A6NMZ7 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC15.78■□□□□ 0.12
COL6A6A6NMZ7 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL6A6A6NMZ7 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
COL6A6A6NMZ7 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL6A6A6NMZ7 AC002056.1-201ENST00000395613 760 ntBASIC15.78■□□□□ 0.12
COL6A6A6NMZ7 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC15.78■□□□□ 0.12
COL6A6A6NMZ7 SLC25A6P5-201ENST00000435663 894 ntBASIC15.78■□□□□ 0.12
COL6A6A6NMZ7 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL6A6A6NMZ7 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC15.78■□□□□ 0.12
COL6A6A6NMZ7 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
COL6A6A6NMZ7 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
COL6A6A6NMZ7 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC15.77■□□□□ 0.12
COL6A6A6NMZ7 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
COL6A6A6NMZ7 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
COL6A6A6NMZ7 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
COL6A6A6NMZ7 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC15.77■□□□□ 0.12
COL6A6A6NMZ7 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.12
COL6A6A6NMZ7 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.12
COL6A6A6NMZ7 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
COL6A6A6NMZ7 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC15.77■□□□□ 0.12
COL6A6A6NMZ7 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
COL6A6A6NMZ7 MIR6805-201ENST00000615055 62 ntBASIC15.77■□□□□ 0.12
COL6A6A6NMZ7 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC15.77■□□□□ 0.11
COL6A6A6NMZ7 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.11
COL6A6A6NMZ7 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.11
COL6A6A6NMZ7 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC15.77■□□□□ 0.11
COL6A6A6NMZ7 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
COL6A6A6NMZ7 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC15.77■□□□□ 0.11
COL6A6A6NMZ7 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC15.77■□□□□ 0.11
COL6A6A6NMZ7 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
COL6A6A6NMZ7 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
COL6A6A6NMZ7 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
COL6A6A6NMZ7 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC15.77■□□□□ 0.11
COL6A6A6NMZ7 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC15.77■□□□□ 0.11
COL6A6A6NMZ7 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC15.77■□□□□ 0.11
COL6A6A6NMZ7 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.11
COL6A6A6NMZ7 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC15.77■□□□□ 0.11
COL6A6A6NMZ7 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
COL6A6A6NMZ7 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
COL6A6A6NMZ7 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC15.77■□□□□ 0.11
COL6A6A6NMZ7 RAB34-224ENST00000636513 888 ntTSL 5 BASIC15.77■□□□□ 0.11
COL6A6A6NMZ7 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC15.76■□□□□ 0.11
COL6A6A6NMZ7 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
COL6A6A6NMZ7 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
COL6A6A6NMZ7 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
COL6A6A6NMZ7 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC15.76■□□□□ 0.11
COL6A6A6NMZ7 AL049757.1-201ENST00000616842 1596 ntBASIC15.76■□□□□ 0.11
COL6A6A6NMZ7 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
COL6A6A6NMZ7 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
COL6A6A6NMZ7 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC15.76■□□□□ 0.11
COL6A6A6NMZ7 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
COL6A6A6NMZ7 CXCL1P1-201ENST00000502804 216 ntBASIC15.76■□□□□ 0.11
COL6A6A6NMZ7 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC15.76■□□□□ 0.11
COL6A6A6NMZ7 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC15.76■□□□□ 0.11
COL6A6A6NMZ7 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC15.76■□□□□ 0.11
COL6A6A6NMZ7 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
COL6A6A6NMZ7 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
COL6A6A6NMZ7 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
COL6A6A6NMZ7 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC15.76■□□□□ 0.11
COL6A6A6NMZ7 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC15.76■□□□□ 0.11
COL6A6A6NMZ7 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC15.76■□□□□ 0.11
COL6A6A6NMZ7 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC15.76■□□□□ 0.11
COL6A6A6NMZ7 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC15.76■□□□□ 0.11
COL6A6A6NMZ7 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
COL6A6A6NMZ7 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
COL6A6A6NMZ7 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
COL6A6A6NMZ7 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
COL6A6A6NMZ7 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC15.75■□□□□ 0.11
COL6A6A6NMZ7 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC15.75■□□□□ 0.11
COL6A6A6NMZ7 AC079776.1-201ENST00000401540 1152 ntBASIC15.75■□□□□ 0.11
COL6A6A6NMZ7 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC15.75■□□□□ 0.11
COL6A6A6NMZ7 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC15.75■□□□□ 0.11
COL6A6A6NMZ7 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC15.75■□□□□ 0.11
COL6A6A6NMZ7 NOP2-211ENST00000540228 668 ntTSL 2 BASIC15.75■□□□□ 0.11
COL6A6A6NMZ7 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
COL6A6A6NMZ7 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC15.75■□□□□ 0.11
COL6A6A6NMZ7 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC15.75■□□□□ 0.11
COL6A6A6NMZ7 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
COL6A6A6NMZ7 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC15.75■□□□□ 0.11
COL6A6A6NMZ7 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC15.75■□□□□ 0.11
COL6A6A6NMZ7 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC15.75■□□□□ 0.11
COL6A6A6NMZ7 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
COL6A6A6NMZ7 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
COL6A6A6NMZ7 AL161938.1-201ENST00000569833 2180 ntBASIC15.75■□□□□ 0.11
COL6A6A6NMZ7 FUT8-AS1-201ENST00000621019 1521 ntBASIC15.75■□□□□ 0.11
COL6A6A6NMZ7 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
COL6A6A6NMZ7 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
COL6A6A6NMZ7 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
COL6A6A6NMZ7 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC15.75■□□□□ 0.11
COL6A6A6NMZ7 FO538757.1-201ENST00000623083 1397 ntBASIC15.75■□□□□ 0.11
COL6A6A6NMZ7 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
COL6A6A6NMZ7 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
COL6A6A6NMZ7 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
COL6A6A6NMZ7 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
COL6A6A6NMZ7 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
COL6A6A6NMZ7 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
COL6A6A6NMZ7 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
COL6A6A6NMZ7 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
COL6A6A6NMZ7 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 50.7 ms