Protein–RNA interactions for Protein: A6NKD9

CCDC85C, Coiled-coil domain-containing protein 85C, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC85CA6NKD9 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC19.29■□□□□ 0.68
CCDC85CA6NKD9 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC85CA6NKD9 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC85CA6NKD9 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC19.29■□□□□ 0.68
CCDC85CA6NKD9 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC19.29■□□□□ 0.68
CCDC85CA6NKD9 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC19.29■□□□□ 0.68
CCDC85CA6NKD9 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC19.29■□□□□ 0.68
CCDC85CA6NKD9 DYDC1-201ENST00000372202 612 ntAPPRIS P1 TSL 3 BASIC19.29■□□□□ 0.68
CCDC85CA6NKD9 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC19.29■□□□□ 0.68
CCDC85CA6NKD9 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC85CA6NKD9 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC19.29■□□□□ 0.68
CCDC85CA6NKD9 THTPA-204ENST00000554970 569 ntTSL 4 BASIC19.29■□□□□ 0.68
CCDC85CA6NKD9 THTPA-206ENST00000556015 535 ntTSL 3 BASIC19.29■□□□□ 0.68
CCDC85CA6NKD9 AC008735.3-201ENST00000596646 500 ntBASIC19.29■□□□□ 0.68
CCDC85CA6NKD9 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC19.29■□□□□ 0.68
CCDC85CA6NKD9 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC85CA6NKD9 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC85CA6NKD9 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC85CA6NKD9 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC85CA6NKD9 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC85CA6NKD9 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC19.28■□□□□ 0.68
CCDC85CA6NKD9 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC85CA6NKD9 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC19.28■□□□□ 0.68
CCDC85CA6NKD9 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC85CA6NKD9 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
CCDC85CA6NKD9 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC19.28■□□□□ 0.68
CCDC85CA6NKD9 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC19.28■□□□□ 0.68
CCDC85CA6NKD9 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC85CA6NKD9 MPRIPP1-201ENST00000452433 1089 ntBASIC19.28■□□□□ 0.68
CCDC85CA6NKD9 CROCCP4-201ENST00000457096 498 ntBASIC19.28■□□□□ 0.68
CCDC85CA6NKD9 FUZ-207ENST00000526575 482 ntTSL 4 BASIC19.28■□□□□ 0.68
CCDC85CA6NKD9 AGER-214ENST00000538695 487 ntTSL 2 BASIC19.28■□□□□ 0.68
CCDC85CA6NKD9 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC85CA6NKD9 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC19.28■□□□□ 0.68
CCDC85CA6NKD9 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC85CA6NKD9 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
CCDC85CA6NKD9 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC85CA6NKD9 AC007431.3-201ENST00000623221 587 ntBASIC19.28■□□□□ 0.68
CCDC85CA6NKD9 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
CCDC85CA6NKD9 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC19.28■□□□□ 0.68
CCDC85CA6NKD9 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC19.28■□□□□ 0.68
CCDC85CA6NKD9 HARS-203ENST00000431330 1774 ntTSL 2 BASIC19.28■□□□□ 0.68
CCDC85CA6NKD9 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC85CA6NKD9 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
CCDC85CA6NKD9 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC19.28■□□□□ 0.68
CCDC85CA6NKD9 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC85CA6NKD9 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC19.28■□□□□ 0.68
CCDC85CA6NKD9 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
CCDC85CA6NKD9 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC19.27■□□□□ 0.68
CCDC85CA6NKD9 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC85CA6NKD9 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC19.27■□□□□ 0.68
CCDC85CA6NKD9 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC19.27■□□□□ 0.68
CCDC85CA6NKD9 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC19.27■□□□□ 0.68
CCDC85CA6NKD9 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC85CA6NKD9 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC85CA6NKD9 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC19.27■□□□□ 0.68
CCDC85CA6NKD9 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
CCDC85CA6NKD9 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC85CA6NKD9 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC85CA6NKD9 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC19.27■□□□□ 0.68
CCDC85CA6NKD9 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC19.27■□□□□ 0.68
CCDC85CA6NKD9 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC19.27■□□□□ 0.68
CCDC85CA6NKD9 AC083949.1-201ENST00000422013 657 ntTSL 3 BASIC19.27■□□□□ 0.68
CCDC85CA6NKD9 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC19.27■□□□□ 0.68
CCDC85CA6NKD9 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC19.27■□□□□ 0.68
CCDC85CA6NKD9 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC85CA6NKD9 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
CCDC85CA6NKD9 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC85CA6NKD9 TECR-220ENST00000600083 1204 ntTSL 2 BASIC19.27■□□□□ 0.68
CCDC85CA6NKD9 U62317.3-201ENST00000608319 855 ntBASIC19.27■□□□□ 0.68
CCDC85CA6NKD9 AC004840.1-201ENST00000636359 365 ntBASIC19.27■□□□□ 0.68
CCDC85CA6NKD9 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC19.27■□□□□ 0.68
CCDC85CA6NKD9 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC85CA6NKD9 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
CCDC85CA6NKD9 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
CCDC85CA6NKD9 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC19.27■□□□□ 0.67
CCDC85CA6NKD9 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC19.27■□□□□ 0.67
CCDC85CA6NKD9 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
CCDC85CA6NKD9 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC85CA6NKD9 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC85CA6NKD9 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC85CA6NKD9 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC85CA6NKD9 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC85CA6NKD9 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC85CA6NKD9 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC85CA6NKD9 AC018445.3-201ENST00000624177 1945 ntBASIC19.26■□□□□ 0.67
CCDC85CA6NKD9 ANKRD19P-201ENST00000338192 862 ntBASIC19.26■□□□□ 0.67
CCDC85CA6NKD9 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC19.26■□□□□ 0.67
CCDC85CA6NKD9 APOC3-202ENST00000375345 604 ntTSL 5 BASIC19.26■□□□□ 0.67
CCDC85CA6NKD9 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
CCDC85CA6NKD9 OSM-203ENST00000403463 464 ntTSL 3 BASIC19.26■□□□□ 0.67
CCDC85CA6NKD9 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC19.26■□□□□ 0.67
CCDC85CA6NKD9 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC85CA6NKD9 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC85CA6NKD9 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC19.26■□□□□ 0.67
CCDC85CA6NKD9 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC19.26■□□□□ 0.67
CCDC85CA6NKD9 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC19.26■□□□□ 0.67
CCDC85CA6NKD9 MBP-227ENST00000526111 581 ntTSL 4 BASIC19.26■□□□□ 0.67
CCDC85CA6NKD9 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC85CA6NKD9 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC19.26■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms