Protein–RNA interactions for Protein: Q9Y3I0

RTCB, tRNA-splicing ligase RtcB homolog, humanhuman

Known RBP Predictions only

Length 505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTCBQ9Y3I0 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
RTCBQ9Y3I0 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC22.08■■□□□ 1.13
RTCBQ9Y3I0 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
RTCBQ9Y3I0 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
RTCBQ9Y3I0 AL627223.1-201ENST00000416693 442 ntBASIC22.08■■□□□ 1.13
RTCBQ9Y3I0 TIMM8BP1-201ENST00000452384 211 ntBASIC22.08■■□□□ 1.13
RTCBQ9Y3I0 RNA5SP421-201ENST00000516864 134 ntBASIC22.08■■□□□ 1.13
RTCBQ9Y3I0 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC22.08■■□□□ 1.13
RTCBQ9Y3I0 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC22.08■■□□□ 1.13
RTCBQ9Y3I0 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC22.08■■□□□ 1.13
RTCBQ9Y3I0 ACTL9-202ENST00000612068 1252 ntBASIC22.08■■□□□ 1.13
RTCBQ9Y3I0 AJ011932.1-201ENST00000621707 465 ntBASIC22.08■■□□□ 1.13
RTCBQ9Y3I0 AC009093.7-201ENST00000623853 1223 ntBASIC22.08■■□□□ 1.13
RTCBQ9Y3I0 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC22.08■■□□□ 1.13
RTCBQ9Y3I0 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC22.08■■□□□ 1.13
RTCBQ9Y3I0 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
RTCBQ9Y3I0 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC22.08■■□□□ 1.12
RTCBQ9Y3I0 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
RTCBQ9Y3I0 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC22.08■■□□□ 1.12
RTCBQ9Y3I0 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC22.08■■□□□ 1.12
RTCBQ9Y3I0 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC22.08■■□□□ 1.12
RTCBQ9Y3I0 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC22.08■■□□□ 1.12
RTCBQ9Y3I0 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
RTCBQ9Y3I0 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
RTCBQ9Y3I0 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
RTCBQ9Y3I0 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
RTCBQ9Y3I0 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
RTCBQ9Y3I0 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC22.07■■□□□ 1.12
RTCBQ9Y3I0 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC22.07■■□□□ 1.12
RTCBQ9Y3I0 FALEC-201ENST00000416894 566 ntTSL 3 BASIC22.07■■□□□ 1.12
RTCBQ9Y3I0 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC22.07■■□□□ 1.12
RTCBQ9Y3I0 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
RTCBQ9Y3I0 AC067863.1-201ENST00000494933 530 ntBASIC22.07■■□□□ 1.12
RTCBQ9Y3I0 NMU-203ENST00000507338 658 ntTSL 3 BASIC22.07■■□□□ 1.12
RTCBQ9Y3I0 AC190387.1-201ENST00000551683 408 ntBASIC22.07■■□□□ 1.12
RTCBQ9Y3I0 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC22.07■■□□□ 1.12
RTCBQ9Y3I0 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC22.07■■□□□ 1.12
RTCBQ9Y3I0 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC22.07■■□□□ 1.12
RTCBQ9Y3I0 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
RTCBQ9Y3I0 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
RTCBQ9Y3I0 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
RTCBQ9Y3I0 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC22.07■■□□□ 1.12
RTCBQ9Y3I0 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC22.06■■□□□ 1.12
RTCBQ9Y3I0 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
RTCBQ9Y3I0 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
RTCBQ9Y3I0 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC22.06■■□□□ 1.12
RTCBQ9Y3I0 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC22.06■■□□□ 1.12
RTCBQ9Y3I0 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
RTCBQ9Y3I0 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
RTCBQ9Y3I0 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
RTCBQ9Y3I0 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
RTCBQ9Y3I0 AC002056.1-201ENST00000395613 760 ntBASIC22.06■■□□□ 1.12
RTCBQ9Y3I0 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC22.06■■□□□ 1.12
RTCBQ9Y3I0 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
RTCBQ9Y3I0 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC22.06■■□□□ 1.12
RTCBQ9Y3I0 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC22.06■■□□□ 1.12
RTCBQ9Y3I0 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
RTCBQ9Y3I0 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC22.06■■□□□ 1.12
RTCBQ9Y3I0 AQP6-203ENST00000551733 849 ntTSL 3 BASIC22.06■■□□□ 1.12
RTCBQ9Y3I0 DUX4L27-201ENST00000554796 1261 ntBASIC22.06■■□□□ 1.12
RTCBQ9Y3I0 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC22.06■■□□□ 1.12
RTCBQ9Y3I0 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC22.06■■□□□ 1.12
RTCBQ9Y3I0 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
RTCBQ9Y3I0 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC22.06■■□□□ 1.12
RTCBQ9Y3I0 AC026120.1-201ENST00000611536 926 ntBASIC22.06■■□□□ 1.12
RTCBQ9Y3I0 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
RTCBQ9Y3I0 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC22.06■■□□□ 1.12
RTCBQ9Y3I0 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC22.06■■□□□ 1.12
RTCBQ9Y3I0 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC22.06■■□□□ 1.12
RTCBQ9Y3I0 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
RTCBQ9Y3I0 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC22.06■■□□□ 1.12
RTCBQ9Y3I0 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
RTCBQ9Y3I0 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC22.06■■□□□ 1.12
RTCBQ9Y3I0 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
RTCBQ9Y3I0 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
RTCBQ9Y3I0 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
RTCBQ9Y3I0 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC22.05■■□□□ 1.12
RTCBQ9Y3I0 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC22.05■■□□□ 1.12
RTCBQ9Y3I0 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC22.05■■□□□ 1.12
RTCBQ9Y3I0 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC22.05■■□□□ 1.12
RTCBQ9Y3I0 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC22.05■■□□□ 1.12
RTCBQ9Y3I0 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC22.05■■□□□ 1.12
RTCBQ9Y3I0 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
RTCBQ9Y3I0 Z92544.3-201ENST00000624747 417 ntBASIC22.05■■□□□ 1.12
RTCBQ9Y3I0 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
RTCBQ9Y3I0 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
RTCBQ9Y3I0 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC22.05■■□□□ 1.12
RTCBQ9Y3I0 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
RTCBQ9Y3I0 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC22.05■■□□□ 1.12
RTCBQ9Y3I0 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC22.05■■□□□ 1.12
RTCBQ9Y3I0 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
RTCBQ9Y3I0 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
RTCBQ9Y3I0 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
RTCBQ9Y3I0 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC22.04■■□□□ 1.12
RTCBQ9Y3I0 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
RTCBQ9Y3I0 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC22.04■■□□□ 1.12
RTCBQ9Y3I0 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
RTCBQ9Y3I0 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC22.04■■□□□ 1.12
RTCBQ9Y3I0 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
RTCBQ9Y3I0 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms