Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS4AQ9UN37 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
VPS4AQ9UN37 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS4AQ9UN37 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
VPS4AQ9UN37 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
VPS4AQ9UN37 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS4AQ9UN37 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
VPS4AQ9UN37 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS4AQ9UN37 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS4AQ9UN37 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS4AQ9UN37 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
VPS4AQ9UN37 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS4AQ9UN37 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC17.11■□□□□ 0.33
VPS4AQ9UN37 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC17.11■□□□□ 0.33
VPS4AQ9UN37 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC17.11■□□□□ 0.33
VPS4AQ9UN37 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC17.11■□□□□ 0.33
VPS4AQ9UN37 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
VPS4AQ9UN37 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC17.11■□□□□ 0.33
VPS4AQ9UN37 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC17.11■□□□□ 0.33
VPS4AQ9UN37 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS4AQ9UN37 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC17.11■□□□□ 0.33
VPS4AQ9UN37 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
VPS4AQ9UN37 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS4AQ9UN37 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS4AQ9UN37 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS4AQ9UN37 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
VPS4AQ9UN37 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS4AQ9UN37 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
VPS4AQ9UN37 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VPS4AQ9UN37 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VPS4AQ9UN37 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS4AQ9UN37 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS4AQ9UN37 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC17.1■□□□□ 0.33
VPS4AQ9UN37 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS4AQ9UN37 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS4AQ9UN37 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC17.1■□□□□ 0.33
VPS4AQ9UN37 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS4AQ9UN37 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS4AQ9UN37 CHCHD2P8-201ENST00000429873 447 ntBASIC17.1■□□□□ 0.33
VPS4AQ9UN37 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC17.1■□□□□ 0.33
VPS4AQ9UN37 AP002383.4-201ENST00000442518 975 ntBASIC17.1■□□□□ 0.33
VPS4AQ9UN37 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC17.1■□□□□ 0.33
VPS4AQ9UN37 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC17.1■□□□□ 0.33
VPS4AQ9UN37 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
VPS4AQ9UN37 AL662844.1-201ENST00000546340 181 ntBASIC17.1■□□□□ 0.33
VPS4AQ9UN37 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC17.1■□□□□ 0.33
VPS4AQ9UN37 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC17.1■□□□□ 0.33
VPS4AQ9UN37 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS4AQ9UN37 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VPS4AQ9UN37 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
VPS4AQ9UN37 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
VPS4AQ9UN37 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC17.1■□□□□ 0.33
VPS4AQ9UN37 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC17.1■□□□□ 0.33
VPS4AQ9UN37 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VPS4AQ9UN37 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC17.1■□□□□ 0.33
VPS4AQ9UN37 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS4AQ9UN37 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VPS4AQ9UN37 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS4AQ9UN37 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC17.1■□□□□ 0.33
VPS4AQ9UN37 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VPS4AQ9UN37 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS4AQ9UN37 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
VPS4AQ9UN37 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VPS4AQ9UN37 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC17.09■□□□□ 0.33
VPS4AQ9UN37 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
VPS4AQ9UN37 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VPS4AQ9UN37 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
VPS4AQ9UN37 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
VPS4AQ9UN37 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VPS4AQ9UN37 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VPS4AQ9UN37 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
VPS4AQ9UN37 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
VPS4AQ9UN37 TSPY19P-201ENST00000418461 509 ntBASIC17.09■□□□□ 0.33
VPS4AQ9UN37 TSPY18P-201ENST00000441642 509 ntBASIC17.09■□□□□ 0.33
VPS4AQ9UN37 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC17.09■□□□□ 0.33
VPS4AQ9UN37 PNN-202ENST00000553331 656 ntTSL 3 BASIC17.09■□□□□ 0.33
VPS4AQ9UN37 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC17.09■□□□□ 0.33
VPS4AQ9UN37 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
VPS4AQ9UN37 AL732292.2-201ENST00000609649 430 ntBASIC17.09■□□□□ 0.33
VPS4AQ9UN37 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC17.09■□□□□ 0.33
VPS4AQ9UN37 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VPS4AQ9UN37 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
VPS4AQ9UN37 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VPS4AQ9UN37 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC17.09■□□□□ 0.33
VPS4AQ9UN37 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VPS4AQ9UN37 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
VPS4AQ9UN37 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
VPS4AQ9UN37 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
VPS4AQ9UN37 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VPS4AQ9UN37 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VPS4AQ9UN37 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VPS4AQ9UN37 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
VPS4AQ9UN37 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
VPS4AQ9UN37 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
VPS4AQ9UN37 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
VPS4AQ9UN37 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.33
VPS4AQ9UN37 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC17.08■□□□□ 0.33
VPS4AQ9UN37 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
VPS4AQ9UN37 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.33
VPS4AQ9UN37 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms