Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRIM56Q9BRZ2 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRIM56Q9BRZ2 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC18.03■□□□□ 0.48
TRIM56Q9BRZ2 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC18.03■□□□□ 0.48
TRIM56Q9BRZ2 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
TRIM56Q9BRZ2 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC18.03■□□□□ 0.48
TRIM56Q9BRZ2 AP001094.4-201ENST00000579008 2176 ntBASIC18.03■□□□□ 0.48
TRIM56Q9BRZ2 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRIM56Q9BRZ2 AC133963.1-201ENST00000504166 1679 ntBASIC18.03■□□□□ 0.48
TRIM56Q9BRZ2 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
TRIM56Q9BRZ2 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.48
TRIM56Q9BRZ2 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC18.02■□□□□ 0.48
TRIM56Q9BRZ2 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
TRIM56Q9BRZ2 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
TRIM56Q9BRZ2 LGALS8-AS1-201ENST00000487567 1457 ntBASIC18.02■□□□□ 0.48
TRIM56Q9BRZ2 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
TRIM56Q9BRZ2 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
TRIM56Q9BRZ2 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
TRIM56Q9BRZ2 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
TRIM56Q9BRZ2 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
TRIM56Q9BRZ2 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
TRIM56Q9BRZ2 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
TRIM56Q9BRZ2 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
TRIM56Q9BRZ2 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC18.02■□□□□ 0.48
TRIM56Q9BRZ2 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
TRIM56Q9BRZ2 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.48
TRIM56Q9BRZ2 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC18.02■□□□□ 0.48
TRIM56Q9BRZ2 AC034232.1-201ENST00000506026 1064 ntBASIC18.02■□□□□ 0.48
TRIM56Q9BRZ2 AC113404.2-201ENST00000507884 177 ntBASIC18.02■□□□□ 0.48
TRIM56Q9BRZ2 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC18.02■□□□□ 0.48
TRIM56Q9BRZ2 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
TRIM56Q9BRZ2 AC005363.2-201ENST00000618631 242 ntBASIC18.02■□□□□ 0.48
TRIM56Q9BRZ2 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
TRIM56Q9BRZ2 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC18.02■□□□□ 0.47
TRIM56Q9BRZ2 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.47
TRIM56Q9BRZ2 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC18.02■□□□□ 0.47
TRIM56Q9BRZ2 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC18.02■□□□□ 0.47
TRIM56Q9BRZ2 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
TRIM56Q9BRZ2 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC18.02■□□□□ 0.47
TRIM56Q9BRZ2 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
TRIM56Q9BRZ2 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC18.02■□□□□ 0.47
TRIM56Q9BRZ2 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC18.02■□□□□ 0.47
TRIM56Q9BRZ2 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC18.02■□□□□ 0.47
TRIM56Q9BRZ2 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
TRIM56Q9BRZ2 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC18.01■□□□□ 0.47
TRIM56Q9BRZ2 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRIM56Q9BRZ2 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRIM56Q9BRZ2 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
TRIM56Q9BRZ2 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRIM56Q9BRZ2 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRIM56Q9BRZ2 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC18.01■□□□□ 0.47
TRIM56Q9BRZ2 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
TRIM56Q9BRZ2 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRIM56Q9BRZ2 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC18.01■□□□□ 0.47
TRIM56Q9BRZ2 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRIM56Q9BRZ2 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRIM56Q9BRZ2 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC18.01■□□□□ 0.47
TRIM56Q9BRZ2 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRIM56Q9BRZ2 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
TRIM56Q9BRZ2 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRIM56Q9BRZ2 AC005521.1-201ENST00000393351 872 ntBASIC18.01■□□□□ 0.47
TRIM56Q9BRZ2 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC18.01■□□□□ 0.47
TRIM56Q9BRZ2 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC18.01■□□□□ 0.47
TRIM56Q9BRZ2 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC18.01■□□□□ 0.47
TRIM56Q9BRZ2 SNX5-210ENST00000481323 562 ntTSL 3 BASIC18.01■□□□□ 0.47
TRIM56Q9BRZ2 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC18.01■□□□□ 0.47
TRIM56Q9BRZ2 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC18.01■□□□□ 0.47
TRIM56Q9BRZ2 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC18.01■□□□□ 0.47
TRIM56Q9BRZ2 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC18.01■□□□□ 0.47
TRIM56Q9BRZ2 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRIM56Q9BRZ2 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRIM56Q9BRZ2 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRIM56Q9BRZ2 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRIM56Q9BRZ2 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRIM56Q9BRZ2 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC18■□□□□ 0.47
TRIM56Q9BRZ2 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
TRIM56Q9BRZ2 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
TRIM56Q9BRZ2 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC18■□□□□ 0.47
TRIM56Q9BRZ2 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC18■□□□□ 0.47
TRIM56Q9BRZ2 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC18■□□□□ 0.47
TRIM56Q9BRZ2 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC18■□□□□ 0.47
TRIM56Q9BRZ2 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC18■□□□□ 0.47
TRIM56Q9BRZ2 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
TRIM56Q9BRZ2 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
TRIM56Q9BRZ2 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
TRIM56Q9BRZ2 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC18■□□□□ 0.47
TRIM56Q9BRZ2 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC18■□□□□ 0.47
TRIM56Q9BRZ2 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
TRIM56Q9BRZ2 AL137013.1-201ENST00000432946 1228 ntBASIC18■□□□□ 0.47
TRIM56Q9BRZ2 HLA-F-220ENST00000434407 884 ntBASIC18■□□□□ 0.47
TRIM56Q9BRZ2 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC18■□□□□ 0.47
TRIM56Q9BRZ2 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
TRIM56Q9BRZ2 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC18■□□□□ 0.47
TRIM56Q9BRZ2 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC18■□□□□ 0.47
TRIM56Q9BRZ2 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC18■□□□□ 0.47
TRIM56Q9BRZ2 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC18■□□□□ 0.47
TRIM56Q9BRZ2 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
TRIM56Q9BRZ2 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC18■□□□□ 0.47
TRIM56Q9BRZ2 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
TRIM56Q9BRZ2 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms