Protein–RNA interactions for Protein: Q96DC8

ECHDC3, Enoyl-CoA hydratase domain-containing protein 3, mitochondrial, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC3Q96DC8 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
ECHDC3Q96DC8 AC009336.1-201ENST00000608941 1553 ntBASIC17.62■□□□□ 0.41
ECHDC3Q96DC8 AC134043.2-201ENST00000624206 2238 ntBASIC17.62■□□□□ 0.41
ECHDC3Q96DC8 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
ECHDC3Q96DC8 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
ECHDC3Q96DC8 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
ECHDC3Q96DC8 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC17.61■□□□□ 0.41
ECHDC3Q96DC8 AC148477.5-201ENST00000625164 1645 ntBASIC17.61■□□□□ 0.41
ECHDC3Q96DC8 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
ECHDC3Q96DC8 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC17.61■□□□□ 0.41
ECHDC3Q96DC8 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
ECHDC3Q96DC8 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
ECHDC3Q96DC8 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
ECHDC3Q96DC8 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC17.61■□□□□ 0.41
ECHDC3Q96DC8 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
ECHDC3Q96DC8 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
ECHDC3Q96DC8 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
ECHDC3Q96DC8 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
ECHDC3Q96DC8 MRPL3P1-201ENST00000400109 1033 ntBASIC17.61■□□□□ 0.41
ECHDC3Q96DC8 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC17.61■□□□□ 0.41
ECHDC3Q96DC8 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC17.61■□□□□ 0.41
ECHDC3Q96DC8 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC17.61■□□□□ 0.41
ECHDC3Q96DC8 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC17.61■□□□□ 0.41
ECHDC3Q96DC8 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC17.61■□□□□ 0.41
ECHDC3Q96DC8 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC17.61■□□□□ 0.41
ECHDC3Q96DC8 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC17.61■□□□□ 0.41
ECHDC3Q96DC8 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC17.61■□□□□ 0.41
ECHDC3Q96DC8 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
ECHDC3Q96DC8 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC17.61■□□□□ 0.41
ECHDC3Q96DC8 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
ECHDC3Q96DC8 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC17.61■□□□□ 0.41
ECHDC3Q96DC8 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC17.61■□□□□ 0.41
ECHDC3Q96DC8 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC17.61■□□□□ 0.41
ECHDC3Q96DC8 GNAS-203ENST00000306120 1878 ntBASIC17.61■□□□□ 0.41
ECHDC3Q96DC8 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
ECHDC3Q96DC8 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
ECHDC3Q96DC8 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
ECHDC3Q96DC8 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
ECHDC3Q96DC8 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
ECHDC3Q96DC8 AC068880.1-201ENST00000507289 2297 ntBASIC17.6■□□□□ 0.41
ECHDC3Q96DC8 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC17.6■□□□□ 0.41
ECHDC3Q96DC8 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC17.6■□□□□ 0.41
ECHDC3Q96DC8 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
ECHDC3Q96DC8 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
ECHDC3Q96DC8 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
ECHDC3Q96DC8 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
ECHDC3Q96DC8 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
ECHDC3Q96DC8 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
ECHDC3Q96DC8 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC17.6■□□□□ 0.41
ECHDC3Q96DC8 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
ECHDC3Q96DC8 RNPS1P1-201ENST00000507437 918 ntBASIC17.6■□□□□ 0.41
ECHDC3Q96DC8 STK19B-204ENST00000512515 211 ntBASIC17.6■□□□□ 0.41
ECHDC3Q96DC8 RNA5SP419-201ENST00000515908 135 ntBASIC17.6■□□□□ 0.41
ECHDC3Q96DC8 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC17.6■□□□□ 0.41
ECHDC3Q96DC8 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC17.6■□□□□ 0.41
ECHDC3Q96DC8 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC17.6■□□□□ 0.41
ECHDC3Q96DC8 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
ECHDC3Q96DC8 AC064862.7-201ENST00000604520 867 ntBASIC17.6■□□□□ 0.41
ECHDC3Q96DC8 AC025062.2-201ENST00000605477 670 ntBASIC17.6■□□□□ 0.41
ECHDC3Q96DC8 AL139327.4-201ENST00000612362 153 ntBASIC17.6■□□□□ 0.41
ECHDC3Q96DC8 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
ECHDC3Q96DC8 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
ECHDC3Q96DC8 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC17.6■□□□□ 0.41
ECHDC3Q96DC8 AL022326.1-202ENST00000641533 845 ntBASIC17.6■□□□□ 0.41
ECHDC3Q96DC8 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
ECHDC3Q96DC8 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
ECHDC3Q96DC8 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC17.6■□□□□ 0.41
ECHDC3Q96DC8 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
ECHDC3Q96DC8 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC17.6■□□□□ 0.41
ECHDC3Q96DC8 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
ECHDC3Q96DC8 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
ECHDC3Q96DC8 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
ECHDC3Q96DC8 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
ECHDC3Q96DC8 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC17.6■□□□□ 0.41
ECHDC3Q96DC8 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
ECHDC3Q96DC8 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
ECHDC3Q96DC8 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC17.59■□□□□ 0.41
ECHDC3Q96DC8 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
ECHDC3Q96DC8 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
ECHDC3Q96DC8 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC17.59■□□□□ 0.41
ECHDC3Q96DC8 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
ECHDC3Q96DC8 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC17.59■□□□□ 0.41
ECHDC3Q96DC8 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC17.59■□□□□ 0.41
ECHDC3Q96DC8 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
ECHDC3Q96DC8 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
ECHDC3Q96DC8 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC17.59■□□□□ 0.41
ECHDC3Q96DC8 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
ECHDC3Q96DC8 MED22-202ENST00000371999 987 ntTSL 3 BASIC17.59■□□□□ 0.41
ECHDC3Q96DC8 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC17.59■□□□□ 0.41
ECHDC3Q96DC8 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC17.59■□□□□ 0.41
ECHDC3Q96DC8 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
ECHDC3Q96DC8 BX005266.1-201ENST00000473402 457 ntBASIC17.59■□□□□ 0.41
ECHDC3Q96DC8 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
ECHDC3Q96DC8 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC17.59■□□□□ 0.41
ECHDC3Q96DC8 AC073648.2-201ENST00000510116 352 ntBASIC17.59■□□□□ 0.41
ECHDC3Q96DC8 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC17.59■□□□□ 0.41
ECHDC3Q96DC8 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC17.59■□□□□ 0.41
ECHDC3Q96DC8 AL662844.1-201ENST00000546340 181 ntBASIC17.59■□□□□ 0.41
ECHDC3Q96DC8 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC17.59■□□□□ 0.41
ECHDC3Q96DC8 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms