Protein–RNA interactions for Protein: Q6P499

NIPAL3, NIPA-like protein 3, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NIPAL3Q6P499 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
NIPAL3Q6P499 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC16.09■□□□□ 0.17
NIPAL3Q6P499 AC084018.2-201ENST00000613093 2607 ntBASIC16.09■□□□□ 0.17
NIPAL3Q6P499 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
NIPAL3Q6P499 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC16.09■□□□□ 0.17
NIPAL3Q6P499 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
NIPAL3Q6P499 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
NIPAL3Q6P499 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC16.09■□□□□ 0.17
NIPAL3Q6P499 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
NIPAL3Q6P499 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
NIPAL3Q6P499 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC16.08■□□□□ 0.17
NIPAL3Q6P499 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC16.08■□□□□ 0.17
NIPAL3Q6P499 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
NIPAL3Q6P499 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
NIPAL3Q6P499 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
NIPAL3Q6P499 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC16.08■□□□□ 0.17
NIPAL3Q6P499 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
NIPAL3Q6P499 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC16.08■□□□□ 0.17
NIPAL3Q6P499 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
NIPAL3Q6P499 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
NIPAL3Q6P499 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
NIPAL3Q6P499 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
NIPAL3Q6P499 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
NIPAL3Q6P499 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
NIPAL3Q6P499 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
NIPAL3Q6P499 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC16.08■□□□□ 0.16
NIPAL3Q6P499 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC16.08■□□□□ 0.16
NIPAL3Q6P499 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
NIPAL3Q6P499 AC113404.2-201ENST00000507884 177 ntBASIC16.08■□□□□ 0.16
NIPAL3Q6P499 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC16.08■□□□□ 0.16
NIPAL3Q6P499 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC16.08■□□□□ 0.16
NIPAL3Q6P499 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC16.08■□□□□ 0.16
NIPAL3Q6P499 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
NIPAL3Q6P499 AC004263.2-201ENST00000617183 678 ntBASIC16.08■□□□□ 0.16
NIPAL3Q6P499 AL121956.5-201ENST00000625261 221 ntBASIC16.08■□□□□ 0.16
NIPAL3Q6P499 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC16.08■□□□□ 0.16
NIPAL3Q6P499 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
NIPAL3Q6P499 HLA-J-201ENST00000462773 1622 ntBASIC16.08■□□□□ 0.16
NIPAL3Q6P499 AL121761.2-201ENST00000598007 1648 ntBASIC16.08■□□□□ 0.16
NIPAL3Q6P499 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
NIPAL3Q6P499 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
NIPAL3Q6P499 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
NIPAL3Q6P499 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
NIPAL3Q6P499 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC16.08■□□□□ 0.16
NIPAL3Q6P499 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
NIPAL3Q6P499 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC16.07■□□□□ 0.16
NIPAL3Q6P499 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC16.07■□□□□ 0.16
NIPAL3Q6P499 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
NIPAL3Q6P499 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
NIPAL3Q6P499 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
NIPAL3Q6P499 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC16.07■□□□□ 0.16
NIPAL3Q6P499 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
NIPAL3Q6P499 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
NIPAL3Q6P499 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
NIPAL3Q6P499 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
NIPAL3Q6P499 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
NIPAL3Q6P499 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
NIPAL3Q6P499 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
NIPAL3Q6P499 ARMC10P1-201ENST00000313754 855 ntBASIC16.07■□□□□ 0.16
NIPAL3Q6P499 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC16.07■□□□□ 0.16
NIPAL3Q6P499 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
NIPAL3Q6P499 IGHGP-201ENST00000390555 1178 ntBASIC16.07■□□□□ 0.16
NIPAL3Q6P499 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
NIPAL3Q6P499 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC16.07■□□□□ 0.16
NIPAL3Q6P499 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC16.07■□□□□ 0.16
NIPAL3Q6P499 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC16.07■□□□□ 0.16
NIPAL3Q6P499 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC16.07■□□□□ 0.16
NIPAL3Q6P499 AL136038.3-201ENST00000561909 1096 ntBASIC16.07■□□□□ 0.16
NIPAL3Q6P499 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC16.07■□□□□ 0.16
NIPAL3Q6P499 AL445228.2-201ENST00000605589 952 ntBASIC16.07■□□□□ 0.16
NIPAL3Q6P499 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
NIPAL3Q6P499 LINC00167-201ENST00000530583 1419 ntBASIC16.07■□□□□ 0.16
NIPAL3Q6P499 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC16.07■□□□□ 0.16
NIPAL3Q6P499 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC16.07■□□□□ 0.16
NIPAL3Q6P499 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC16.07■□□□□ 0.16
NIPAL3Q6P499 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
NIPAL3Q6P499 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC16.07■□□□□ 0.16
NIPAL3Q6P499 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC16.07■□□□□ 0.16
NIPAL3Q6P499 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC16.07■□□□□ 0.16
NIPAL3Q6P499 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
NIPAL3Q6P499 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
NIPAL3Q6P499 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
NIPAL3Q6P499 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
NIPAL3Q6P499 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
NIPAL3Q6P499 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
NIPAL3Q6P499 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
NIPAL3Q6P499 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
NIPAL3Q6P499 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
NIPAL3Q6P499 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
NIPAL3Q6P499 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
NIPAL3Q6P499 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
NIPAL3Q6P499 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
NIPAL3Q6P499 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
NIPAL3Q6P499 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC16.06■□□□□ 0.16
NIPAL3Q6P499 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
NIPAL3Q6P499 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC16.06■□□□□ 0.16
NIPAL3Q6P499 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
NIPAL3Q6P499 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC16.06■□□□□ 0.16
NIPAL3Q6P499 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
NIPAL3Q6P499 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC16.06■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms