Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
USF3Q68DE3 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
USF3Q68DE3 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
USF3Q68DE3 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC15.16■□□□□ 0.02
USF3Q68DE3 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC15.16■□□□□ 0.02
USF3Q68DE3 AC098831.1-202ENST00000438821 336 ntBASIC15.16■□□□□ 0.02
USF3Q68DE3 RBSN-204ENST00000449050 903 ntTSL 2 BASIC15.16■□□□□ 0.02
USF3Q68DE3 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC15.16■□□□□ 0.02
USF3Q68DE3 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC15.16■□□□□ 0.02
USF3Q68DE3 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
USF3Q68DE3 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
USF3Q68DE3 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
USF3Q68DE3 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC15.15■□□□□ 0.02
USF3Q68DE3 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
USF3Q68DE3 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
USF3Q68DE3 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
USF3Q68DE3 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
USF3Q68DE3 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
USF3Q68DE3 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC15.15■□□□□ 0.02
USF3Q68DE3 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
USF3Q68DE3 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
USF3Q68DE3 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
USF3Q68DE3 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
USF3Q68DE3 AC023274.1-201ENST00000418278 595 ntBASIC15.15■□□□□ 0.02
USF3Q68DE3 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC15.15■□□□□ 0.02
USF3Q68DE3 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC15.15■□□□□ 0.02
USF3Q68DE3 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC15.15■□□□□ 0.02
USF3Q68DE3 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC15.15■□□□□ 0.02
USF3Q68DE3 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC15.15■□□□□ 0.02
USF3Q68DE3 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC15.15■□□□□ 0.02
USF3Q68DE3 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC15.15■□□□□ 0.02
USF3Q68DE3 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC15.15■□□□□ 0.02
USF3Q68DE3 HOTTIP_1.1-201ENST00000620415 57 ntBASIC15.15■□□□□ 0.02
USF3Q68DE3 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC15.15■□□□□ 0.02
USF3Q68DE3 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
USF3Q68DE3 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
USF3Q68DE3 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
USF3Q68DE3 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
USF3Q68DE3 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC15.15■□□□□ 0.02
USF3Q68DE3 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
USF3Q68DE3 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
USF3Q68DE3 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
USF3Q68DE3 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC15.15■□□□□ 0.02
USF3Q68DE3 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC15.15■□□□□ 0.02
USF3Q68DE3 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
USF3Q68DE3 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC15.15■□□□□ 0.02
USF3Q68DE3 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
USF3Q68DE3 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
USF3Q68DE3 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC15.15■□□□□ 0.02
USF3Q68DE3 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC15.15■□□□□ 0.02
USF3Q68DE3 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC15.15■□□□□ 0.02
USF3Q68DE3 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC15.15■□□□□ 0.02
USF3Q68DE3 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC15.15■□□□□ 0.02
USF3Q68DE3 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC15.15■□□□□ 0.02
USF3Q68DE3 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
USF3Q68DE3 AC132938.6-201ENST00000623828 1655 ntBASIC15.14■□□□□ 0.01
USF3Q68DE3 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
USF3Q68DE3 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
USF3Q68DE3 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC15.14■□□□□ 0.01
USF3Q68DE3 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC15.14■□□□□ 0.01
USF3Q68DE3 AC093677.2-201ENST00000600169 1863 ntBASIC15.14■□□□□ 0.01
USF3Q68DE3 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC15.14■□□□□ 0.01
USF3Q68DE3 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
USF3Q68DE3 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
USF3Q68DE3 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
USF3Q68DE3 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC15.14■□□□□ 0.01
USF3Q68DE3 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC15.14■□□□□ 0.01
USF3Q68DE3 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
USF3Q68DE3 AC025062.2-201ENST00000605477 670 ntBASIC15.14■□□□□ 0.01
USF3Q68DE3 TBC1D3P5-201ENST00000579401 1545 ntBASIC15.14■□□□□ 0.01
USF3Q68DE3 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
USF3Q68DE3 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
USF3Q68DE3 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
USF3Q68DE3 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
USF3Q68DE3 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
USF3Q68DE3 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
USF3Q68DE3 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
USF3Q68DE3 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
USF3Q68DE3 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
USF3Q68DE3 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
USF3Q68DE3 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC15.14■□□□□ 0.01
USF3Q68DE3 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
USF3Q68DE3 AC134043.2-201ENST00000624206 2238 ntBASIC15.13■□□□□ 0.01
USF3Q68DE3 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
USF3Q68DE3 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
USF3Q68DE3 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
USF3Q68DE3 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
USF3Q68DE3 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
USF3Q68DE3 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
USF3Q68DE3 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC15.13■□□□□ 0.01
USF3Q68DE3 RPS8P6-201ENST00000426177 609 ntBASIC15.13■□□□□ 0.01
USF3Q68DE3 AC004832.2-201ENST00000426397 482 ntBASIC15.13■□□□□ 0.01
USF3Q68DE3 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
USF3Q68DE3 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
USF3Q68DE3 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC15.13■□□□□ 0.01
USF3Q68DE3 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC15.13■□□□□ 0.01
USF3Q68DE3 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
USF3Q68DE3 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC15.13■□□□□ 0.01
USF3Q68DE3 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
USF3Q68DE3 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC15.13■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms