Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
VPS13DQ5THJ4 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC11.74□□□□□ -0.53
VPS13DQ5THJ4 STK19B-204ENST00000512515 211 ntBASIC11.74□□□□□ -0.53
VPS13DQ5THJ4 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
VPS13DQ5THJ4 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
VPS13DQ5THJ4 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC11.74□□□□□ -0.53
VPS13DQ5THJ4 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC11.74□□□□□ -0.53
VPS13DQ5THJ4 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC11.74□□□□□ -0.53
VPS13DQ5THJ4 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
VPS13DQ5THJ4 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
VPS13DQ5THJ4 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
VPS13DQ5THJ4 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC11.74□□□□□ -0.53
VPS13DQ5THJ4 AC006116.8-202ENST00000587620 1550 ntBASIC11.74□□□□□ -0.53
VPS13DQ5THJ4 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
VPS13DQ5THJ4 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC11.74□□□□□ -0.53
VPS13DQ5THJ4 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
VPS13DQ5THJ4 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC11.74□□□□□ -0.53
VPS13DQ5THJ4 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC11.74□□□□□ -0.53
VPS13DQ5THJ4 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC11.74□□□□□ -0.53
VPS13DQ5THJ4 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC11.74□□□□□ -0.53
VPS13DQ5THJ4 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC11.74□□□□□ -0.53
VPS13DQ5THJ4 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
VPS13DQ5THJ4 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC11.74□□□□□ -0.53
VPS13DQ5THJ4 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC11.74□□□□□ -0.53
VPS13DQ5THJ4 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC11.74□□□□□ -0.53
VPS13DQ5THJ4 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC11.74□□□□□ -0.53
VPS13DQ5THJ4 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
VPS13DQ5THJ4 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC11.74□□□□□ -0.53
VPS13DQ5THJ4 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC11.74□□□□□ -0.53
VPS13DQ5THJ4 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
VPS13DQ5THJ4 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
VPS13DQ5THJ4 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC11.74□□□□□ -0.53
VPS13DQ5THJ4 EFTUD1P1-204ENST00000560401 1798 ntBASIC11.74□□□□□ -0.53
VPS13DQ5THJ4 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC11.73□□□□□ -0.53
VPS13DQ5THJ4 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC11.73□□□□□ -0.53
VPS13DQ5THJ4 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
VPS13DQ5THJ4 AC092474.2-201ENST00000424288 719 ntBASIC11.73□□□□□ -0.53
VPS13DQ5THJ4 AC069335.1-201ENST00000489972 472 ntBASIC11.73□□□□□ -0.53
VPS13DQ5THJ4 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC11.73□□□□□ -0.53
VPS13DQ5THJ4 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC11.73□□□□□ -0.53
VPS13DQ5THJ4 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC11.73□□□□□ -0.53
VPS13DQ5THJ4 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
VPS13DQ5THJ4 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
VPS13DQ5THJ4 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
VPS13DQ5THJ4 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC11.73□□□□□ -0.53
VPS13DQ5THJ4 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
VPS13DQ5THJ4 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
VPS13DQ5THJ4 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
VPS13DQ5THJ4 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
VPS13DQ5THJ4 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
VPS13DQ5THJ4 AL627223.1-201ENST00000416693 442 ntBASIC11.73□□□□□ -0.53
VPS13DQ5THJ4 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC11.73□□□□□ -0.53
VPS13DQ5THJ4 TSPY16P-201ENST00000449843 468 ntBASIC11.73□□□□□ -0.53
VPS13DQ5THJ4 PPP6R2P1-201ENST00000450880 1275 ntBASIC11.73□□□□□ -0.53
VPS13DQ5THJ4 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC11.73□□□□□ -0.53
VPS13DQ5THJ4 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC11.73□□□□□ -0.53
VPS13DQ5THJ4 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC11.73□□□□□ -0.53
VPS13DQ5THJ4 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
VPS13DQ5THJ4 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
VPS13DQ5THJ4 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
VPS13DQ5THJ4 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC11.73□□□□□ -0.53
VPS13DQ5THJ4 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
VPS13DQ5THJ4 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC11.73□□□□□ -0.53
VPS13DQ5THJ4 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC11.73□□□□□ -0.53
VPS13DQ5THJ4 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC11.73□□□□□ -0.53
VPS13DQ5THJ4 TIMM8BP1-201ENST00000452384 211 ntBASIC11.73□□□□□ -0.53
VPS13DQ5THJ4 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC11.73□□□□□ -0.53
VPS13DQ5THJ4 HFE2-206ENST00000634927 506 ntTSL 4 BASIC11.73□□□□□ -0.53
VPS13DQ5THJ4 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
VPS13DQ5THJ4 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC11.73□□□□□ -0.53
VPS13DQ5THJ4 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
VPS13DQ5THJ4 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
VPS13DQ5THJ4 AC008677.1-201ENST00000519230 1561 ntBASIC11.73□□□□□ -0.53
VPS13DQ5THJ4 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
VPS13DQ5THJ4 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC11.72□□□□□ -0.53
VPS13DQ5THJ4 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC11.72□□□□□ -0.53
VPS13DQ5THJ4 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
VPS13DQ5THJ4 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC11.72□□□□□ -0.53
VPS13DQ5THJ4 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC11.72□□□□□ -0.53
VPS13DQ5THJ4 AP005018.1-201ENST00000525475 301 ntBASIC11.72□□□□□ -0.53
VPS13DQ5THJ4 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
VPS13DQ5THJ4 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
VPS13DQ5THJ4 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC11.72□□□□□ -0.53
VPS13DQ5THJ4 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC11.72□□□□□ -0.53
VPS13DQ5THJ4 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
VPS13DQ5THJ4 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
VPS13DQ5THJ4 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
VPS13DQ5THJ4 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC11.72□□□□□ -0.53
VPS13DQ5THJ4 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC11.72□□□□□ -0.53
VPS13DQ5THJ4 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
VPS13DQ5THJ4 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC11.72□□□□□ -0.53
VPS13DQ5THJ4 ACTG1P4-201ENST00000425123 1122 ntBASIC11.72□□□□□ -0.53
VPS13DQ5THJ4 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
VPS13DQ5THJ4 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC11.72□□□□□ -0.53
VPS13DQ5THJ4 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
VPS13DQ5THJ4 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC11.72□□□□□ -0.53
VPS13DQ5THJ4 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
VPS13DQ5THJ4 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
VPS13DQ5THJ4 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC11.72□□□□□ -0.53
VPS13DQ5THJ4 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Retrieved 100 of 98,524 protein–RNA pairs in 59.3 ms