Protein–RNA interactions for Protein: P58872

RHBDL3, Rhomboid-related protein 3, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDL3P58872 AL590787.1-201ENST00000568856 1315 ntBASIC20.76■□□□□ 0.91
RHBDL3P58872 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
RHBDL3P58872 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
RHBDL3P58872 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC20.75■□□□□ 0.91
RHBDL3P58872 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
RHBDL3P58872 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
RHBDL3P58872 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
RHBDL3P58872 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC20.75■□□□□ 0.91
RHBDL3P58872 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
RHBDL3P58872 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
RHBDL3P58872 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
RHBDL3P58872 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
RHBDL3P58872 ENSA-206ENST00000361631 725 ntTSL 2 BASIC20.75■□□□□ 0.91
RHBDL3P58872 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC20.75■□□□□ 0.91
RHBDL3P58872 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC20.75■□□□□ 0.91
RHBDL3P58872 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC20.75■□□□□ 0.91
RHBDL3P58872 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC20.75■□□□□ 0.91
RHBDL3P58872 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC20.75■□□□□ 0.91
RHBDL3P58872 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC20.75■□□□□ 0.91
RHBDL3P58872 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
RHBDL3P58872 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC20.75■□□□□ 0.91
RHBDL3P58872 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC20.75■□□□□ 0.91
RHBDL3P58872 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
RHBDL3P58872 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
RHBDL3P58872 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
RHBDL3P58872 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC20.74■□□□□ 0.91
RHBDL3P58872 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC20.74■□□□□ 0.91
RHBDL3P58872 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
RHBDL3P58872 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
RHBDL3P58872 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC20.74■□□□□ 0.91
RHBDL3P58872 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
RHBDL3P58872 AL135999.2-201ENST00000622438 1686 ntBASIC20.74■□□□□ 0.91
RHBDL3P58872 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
RHBDL3P58872 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
RHBDL3P58872 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
RHBDL3P58872 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
RHBDL3P58872 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
RHBDL3P58872 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC20.74■□□□□ 0.91
RHBDL3P58872 POLD4-207ENST00000531239 584 ntTSL 2 BASIC20.74■□□□□ 0.91
RHBDL3P58872 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC20.74■□□□□ 0.91
RHBDL3P58872 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC20.74■□□□□ 0.91
RHBDL3P58872 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC20.74■□□□□ 0.91
RHBDL3P58872 MTDHP5-201ENST00000598980 586 ntBASIC20.74■□□□□ 0.91
RHBDL3P58872 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC20.74■□□□□ 0.91
RHBDL3P58872 AL513190.1-201ENST00000621254 727 ntBASIC20.74■□□□□ 0.91
RHBDL3P58872 STX6-204ENST00000542060 4809 ntTSL 2 BASIC20.74■□□□□ 0.91
RHBDL3P58872 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
RHBDL3P58872 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
RHBDL3P58872 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
RHBDL3P58872 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
RHBDL3P58872 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
RHBDL3P58872 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
RHBDL3P58872 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC20.73■□□□□ 0.91
RHBDL3P58872 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
RHBDL3P58872 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
RHBDL3P58872 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
RHBDL3P58872 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
RHBDL3P58872 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
RHBDL3P58872 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
RHBDL3P58872 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
RHBDL3P58872 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
RHBDL3P58872 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC20.73■□□□□ 0.91
RHBDL3P58872 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC20.73■□□□□ 0.91
RHBDL3P58872 AC010654.1-201ENST00000615722 808 ntBASIC20.73■□□□□ 0.91
RHBDL3P58872 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC20.73■□□□□ 0.91
RHBDL3P58872 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC20.73■□□□□ 0.91
RHBDL3P58872 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
RHBDL3P58872 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
RHBDL3P58872 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC20.73■□□□□ 0.91
RHBDL3P58872 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC20.72■□□□□ 0.91
RHBDL3P58872 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC20.72■□□□□ 0.91
RHBDL3P58872 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
RHBDL3P58872 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC20.72■□□□□ 0.91
RHBDL3P58872 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC20.72■□□□□ 0.91
RHBDL3P58872 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
RHBDL3P58872 AC046185.3-201ENST00000623228 1824 ntBASIC20.72■□□□□ 0.91
RHBDL3P58872 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
RHBDL3P58872 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
RHBDL3P58872 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC20.72■□□□□ 0.91
RHBDL3P58872 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC20.72■□□□□ 0.91
RHBDL3P58872 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
RHBDL3P58872 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
RHBDL3P58872 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
RHBDL3P58872 MRPL20P1-201ENST00000400819 433 ntBASIC20.72■□□□□ 0.91
RHBDL3P58872 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
RHBDL3P58872 COA5-202ENST00000409997 557 ntTSL 4 BASIC20.72■□□□□ 0.91
RHBDL3P58872 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC20.72■□□□□ 0.91
RHBDL3P58872 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC20.72■□□□□ 0.91
RHBDL3P58872 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
RHBDL3P58872 MIR3687-2-201ENST00000577708 61 ntBASIC20.72■□□□□ 0.91
RHBDL3P58872 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
RHBDL3P58872 MIR3687-1-201ENST00000614492 61 ntBASIC20.72■□□□□ 0.91
RHBDL3P58872 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
RHBDL3P58872 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
RHBDL3P58872 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
RHBDL3P58872 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
RHBDL3P58872 AC006116.8-202ENST00000587620 1550 ntBASIC20.72■□□□□ 0.91
RHBDL3P58872 AC002310.6-201ENST00000624451 1377 ntBASIC20.72■□□□□ 0.91
RHBDL3P58872 AC135050.7-201ENST00000624508 2218 ntBASIC20.72■□□□□ 0.91
RHBDL3P58872 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms