Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC20.19■□□□□ 0.82
SMARCA1P28370 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC20.19■□□□□ 0.82
SMARCA1P28370 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SMARCA1P28370 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SMARCA1P28370 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SMARCA1P28370 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SMARCA1P28370 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SMARCA1P28370 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SMARCA1P28370 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC20.19■□□□□ 0.82
SMARCA1P28370 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC20.19■□□□□ 0.82
SMARCA1P28370 AC026396.1-201ENST00000419388 421 ntBASIC20.19■□□□□ 0.82
SMARCA1P28370 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
SMARCA1P28370 BX005266.1-201ENST00000473402 457 ntBASIC20.19■□□□□ 0.82
SMARCA1P28370 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
SMARCA1P28370 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC20.19■□□□□ 0.82
SMARCA1P28370 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
SMARCA1P28370 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC20.19■□□□□ 0.82
SMARCA1P28370 CYB561-217ENST00000582997 877 ntTSL 5 BASIC20.19■□□□□ 0.82
SMARCA1P28370 COPE-211ENST00000600932 1144 ntTSL 5 BASIC20.19■□□□□ 0.82
SMARCA1P28370 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
SMARCA1P28370 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC20.19■□□□□ 0.82
SMARCA1P28370 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
SMARCA1P28370 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC20.19■□□□□ 0.82
SMARCA1P28370 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SMARCA1P28370 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC20.19■□□□□ 0.82
SMARCA1P28370 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SMARCA1P28370 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SMARCA1P28370 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SMARCA1P28370 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SMARCA1P28370 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
SMARCA1P28370 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SMARCA1P28370 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SMARCA1P28370 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SMARCA1P28370 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SMARCA1P28370 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC20.18■□□□□ 0.82
SMARCA1P28370 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
SMARCA1P28370 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SMARCA1P28370 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC20.18■□□□□ 0.82
SMARCA1P28370 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC20.18■□□□□ 0.82
SMARCA1P28370 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC20.18■□□□□ 0.82
SMARCA1P28370 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC20.18■□□□□ 0.82
SMARCA1P28370 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SMARCA1P28370 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SMARCA1P28370 RAB17-203ENST00000409576 466 ntTSL 3 BASIC20.18■□□□□ 0.82
SMARCA1P28370 AC009078.2-202ENST00000463353 338 ntBASIC20.18■□□□□ 0.82
SMARCA1P28370 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC20.18■□□□□ 0.82
SMARCA1P28370 RNA5SP419-201ENST00000515908 135 ntBASIC20.18■□□□□ 0.82
SMARCA1P28370 MSRA-206ENST00000521209 814 ntTSL 3 BASIC20.18■□□□□ 0.82
SMARCA1P28370 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SMARCA1P28370 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
SMARCA1P28370 PNMT-203ENST00000581428 677 ntTSL 2 BASIC20.18■□□□□ 0.82
SMARCA1P28370 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC20.18■□□□□ 0.82
SMARCA1P28370 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SMARCA1P28370 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
SMARCA1P28370 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
SMARCA1P28370 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
SMARCA1P28370 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SMARCA1P28370 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SMARCA1P28370 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SMARCA1P28370 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SMARCA1P28370 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SMARCA1P28370 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
SMARCA1P28370 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC20.17■□□□□ 0.82
SMARCA1P28370 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SMARCA1P28370 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC20.17■□□□□ 0.82
SMARCA1P28370 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC20.17■□□□□ 0.82
SMARCA1P28370 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SMARCA1P28370 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC20.17■□□□□ 0.82
SMARCA1P28370 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
SMARCA1P28370 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC20.17■□□□□ 0.82
SMARCA1P28370 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
SMARCA1P28370 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SMARCA1P28370 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC20.17■□□□□ 0.82
SMARCA1P28370 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
SMARCA1P28370 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC20.17■□□□□ 0.82
SMARCA1P28370 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC20.17■□□□□ 0.82
SMARCA1P28370 MRPL3P1-201ENST00000400109 1033 ntBASIC20.17■□□□□ 0.82
SMARCA1P28370 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC20.17■□□□□ 0.82
SMARCA1P28370 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC20.17■□□□□ 0.82
SMARCA1P28370 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC20.17■□□□□ 0.82
SMARCA1P28370 AL773604.1-201ENST00000617417 272 ntBASIC20.17■□□□□ 0.82
SMARCA1P28370 AC107918.4-202ENST00000641623 219 ntBASIC20.17■□□□□ 0.82
SMARCA1P28370 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC20.17■□□□□ 0.82
SMARCA1P28370 AC016396.2-201ENST00000562575 1417 ntBASIC20.17■□□□□ 0.82
SMARCA1P28370 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC20.17■□□□□ 0.82
SMARCA1P28370 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SMARCA1P28370 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SMARCA1P28370 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC20.17■□□□□ 0.82
SMARCA1P28370 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
SMARCA1P28370 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
SMARCA1P28370 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
SMARCA1P28370 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SMARCA1P28370 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
SMARCA1P28370 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC20.16■□□□□ 0.82
SMARCA1P28370 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
SMARCA1P28370 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC20.16■□□□□ 0.82
SMARCA1P28370 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
SMARCA1P28370 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SMARCA1P28370 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SMARCA1P28370 RPS2P28-201ENST00000314255 741 ntBASIC20.16■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 61.1 ms