Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
LMX1BO60663 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
LMX1BO60663 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC15.54■□□□□ 0.08
LMX1BO60663 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
LMX1BO60663 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
LMX1BO60663 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
LMX1BO60663 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC15.54■□□□□ 0.08
LMX1BO60663 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
LMX1BO60663 AC009949.1-201ENST00000623048 1830 ntBASIC15.54■□□□□ 0.08
LMX1BO60663 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC15.54■□□□□ 0.08
LMX1BO60663 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC15.54■□□□□ 0.08
LMX1BO60663 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
LMX1BO60663 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
LMX1BO60663 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
LMX1BO60663 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
LMX1BO60663 AC133963.1-201ENST00000504166 1679 ntBASIC15.54■□□□□ 0.08
LMX1BO60663 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
LMX1BO60663 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC15.53■□□□□ 0.08
LMX1BO60663 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC15.53■□□□□ 0.08
LMX1BO60663 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
LMX1BO60663 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC15.53■□□□□ 0.08
LMX1BO60663 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
LMX1BO60663 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
LMX1BO60663 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
LMX1BO60663 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
LMX1BO60663 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
LMX1BO60663 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
LMX1BO60663 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
LMX1BO60663 LINC00304-203ENST00000565008 1864 ntBASIC15.53■□□□□ 0.08
LMX1BO60663 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
LMX1BO60663 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC15.53■□□□□ 0.08
LMX1BO60663 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
LMX1BO60663 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
LMX1BO60663 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC15.53■□□□□ 0.08
LMX1BO60663 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC15.53■□□□□ 0.08
LMX1BO60663 AL845331.1-201ENST00000424978 1190 ntBASIC15.53■□□□□ 0.08
LMX1BO60663 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC15.53■□□□□ 0.08
LMX1BO60663 PVRIG2P-201ENST00000435460 978 ntBASIC15.53■□□□□ 0.08
LMX1BO60663 FAAHP1-202ENST00000446499 1238 ntBASIC15.53■□□□□ 0.08
LMX1BO60663 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC15.53■□□□□ 0.08
LMX1BO60663 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC15.53■□□□□ 0.08
LMX1BO60663 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC15.53■□□□□ 0.08
LMX1BO60663 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
LMX1BO60663 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
LMX1BO60663 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
LMX1BO60663 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC15.53■□□□□ 0.08
LMX1BO60663 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
LMX1BO60663 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
LMX1BO60663 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC15.53■□□□□ 0.08
LMX1BO60663 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
LMX1BO60663 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
LMX1BO60663 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
LMX1BO60663 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
LMX1BO60663 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
LMX1BO60663 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
LMX1BO60663 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC15.53■□□□□ 0.08
LMX1BO60663 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
LMX1BO60663 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
LMX1BO60663 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC15.52■□□□□ 0.08
LMX1BO60663 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
LMX1BO60663 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
LMX1BO60663 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC15.52■□□□□ 0.08
LMX1BO60663 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC15.52■□□□□ 0.08
LMX1BO60663 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
LMX1BO60663 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC15.52■□□□□ 0.08
LMX1BO60663 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC15.52■□□□□ 0.08
LMX1BO60663 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
LMX1BO60663 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
LMX1BO60663 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
LMX1BO60663 SKP2-204ENST00000508514 821 ntTSL 3 BASIC15.52■□□□□ 0.08
LMX1BO60663 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC15.52■□□□□ 0.08
LMX1BO60663 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
LMX1BO60663 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.07
LMX1BO60663 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
LMX1BO60663 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC15.52■□□□□ 0.07
LMX1BO60663 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.07
LMX1BO60663 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC15.52■□□□□ 0.07
LMX1BO60663 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
LMX1BO60663 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.07
LMX1BO60663 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
LMX1BO60663 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC15.52■□□□□ 0.07
LMX1BO60663 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.07
LMX1BO60663 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
LMX1BO60663 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
LMX1BO60663 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC15.52■□□□□ 0.07
LMX1BO60663 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC15.51■□□□□ 0.07
LMX1BO60663 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
LMX1BO60663 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC15.51■□□□□ 0.07
LMX1BO60663 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC15.51■□□□□ 0.07
LMX1BO60663 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
LMX1BO60663 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC15.51■□□□□ 0.07
LMX1BO60663 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
LMX1BO60663 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC15.51■□□□□ 0.07
LMX1BO60663 AC016734.2-201ENST00000624325 1377 ntBASIC15.51■□□□□ 0.07
LMX1BO60663 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
LMX1BO60663 REXO1L11P-201ENST00000620964 1927 ntBASIC15.51■□□□□ 0.07
LMX1BO60663 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
LMX1BO60663 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
LMX1BO60663 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
LMX1BO60663 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 86.1 ms