Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
COL6A5A8TX70 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
COL6A5A8TX70 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC13.53□□□□□ -0.24
COL6A5A8TX70 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
COL6A5A8TX70 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL6A5A8TX70 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
COL6A5A8TX70 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL6A5A8TX70 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
COL6A5A8TX70 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
COL6A5A8TX70 GLI4-203ENST00000517468 963 ntTSL 5 BASIC13.53□□□□□ -0.24
COL6A5A8TX70 MIR6080-201ENST00000617359 66 ntBASIC13.53□□□□□ -0.24
COL6A5A8TX70 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
COL6A5A8TX70 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL6A5A8TX70 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC13.53□□□□□ -0.24
COL6A5A8TX70 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL6A5A8TX70 AC100803.2-201ENST00000562459 1963 ntBASIC13.53□□□□□ -0.24
COL6A5A8TX70 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
COL6A5A8TX70 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC13.53□□□□□ -0.24
COL6A5A8TX70 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL6A5A8TX70 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL6A5A8TX70 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC13.53□□□□□ -0.24
COL6A5A8TX70 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
COL6A5A8TX70 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL6A5A8TX70 ANKRD19P-201ENST00000338192 862 ntBASIC13.53□□□□□ -0.24
COL6A5A8TX70 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
COL6A5A8TX70 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC13.53□□□□□ -0.24
COL6A5A8TX70 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC13.53□□□□□ -0.24
COL6A5A8TX70 AL512343.1-201ENST00000605837 169 ntBASIC13.53□□□□□ -0.24
COL6A5A8TX70 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
COL6A5A8TX70 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
COL6A5A8TX70 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL6A5A8TX70 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL6A5A8TX70 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
COL6A5A8TX70 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
COL6A5A8TX70 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
COL6A5A8TX70 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
COL6A5A8TX70 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC13.52□□□□□ -0.24
COL6A5A8TX70 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
COL6A5A8TX70 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
COL6A5A8TX70 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
COL6A5A8TX70 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
COL6A5A8TX70 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
COL6A5A8TX70 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.24
COL6A5A8TX70 AP005482.1-201ENST00000563722 1273 ntBASIC13.52□□□□□ -0.24
COL6A5A8TX70 AC073592.8-201ENST00000624126 511 ntBASIC13.52□□□□□ -0.24
COL6A5A8TX70 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC13.52□□□□□ -0.24
COL6A5A8TX70 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.24
COL6A5A8TX70 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.24
COL6A5A8TX70 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC13.52□□□□□ -0.24
COL6A5A8TX70 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC13.52□□□□□ -0.25
COL6A5A8TX70 HARS-203ENST00000431330 1774 ntTSL 2 BASIC13.52□□□□□ -0.25
COL6A5A8TX70 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC13.52□□□□□ -0.25
COL6A5A8TX70 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
COL6A5A8TX70 TTTY23B-201ENST00000442790 549 ntBASIC13.52□□□□□ -0.25
COL6A5A8TX70 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
COL6A5A8TX70 RHOQP1-201ENST00000555758 579 ntBASIC13.52□□□□□ -0.25
COL6A5A8TX70 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
COL6A5A8TX70 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC13.52□□□□□ -0.25
COL6A5A8TX70 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
COL6A5A8TX70 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
COL6A5A8TX70 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
COL6A5A8TX70 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
COL6A5A8TX70 WASH6P-202ENST00000359512 1437 ntBASIC13.52□□□□□ -0.25
COL6A5A8TX70 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
COL6A5A8TX70 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC13.51□□□□□ -0.25
COL6A5A8TX70 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
COL6A5A8TX70 AC125437.2-201ENST00000625180 2167 ntBASIC13.51□□□□□ -0.25
COL6A5A8TX70 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
COL6A5A8TX70 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC13.51□□□□□ -0.25
COL6A5A8TX70 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
COL6A5A8TX70 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC13.51□□□□□ -0.25
COL6A5A8TX70 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL6A5A8TX70 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL6A5A8TX70 CD81-202ENST00000381036 880 ntTSL 3 BASIC13.51□□□□□ -0.25
COL6A5A8TX70 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC13.51□□□□□ -0.25
COL6A5A8TX70 SPCS2P4-201ENST00000436160 681 ntBASIC13.51□□□□□ -0.25
COL6A5A8TX70 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC13.51□□□□□ -0.25
COL6A5A8TX70 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL6A5A8TX70 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL6A5A8TX70 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
COL6A5A8TX70 TECR-220ENST00000600083 1204 ntTSL 2 BASIC13.51□□□□□ -0.25
COL6A5A8TX70 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC13.51□□□□□ -0.25
COL6A5A8TX70 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
COL6A5A8TX70 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL6A5A8TX70 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL6A5A8TX70 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC13.51□□□□□ -0.25
COL6A5A8TX70 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL6A5A8TX70 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL6A5A8TX70 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL6A5A8TX70 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC13.51□□□□□ -0.25
COL6A5A8TX70 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL6A5A8TX70 FLYWCH1P1-201ENST00000460917 1874 ntBASIC13.51□□□□□ -0.25
COL6A5A8TX70 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL6A5A8TX70 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL6A5A8TX70 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
COL6A5A8TX70 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
COL6A5A8TX70 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
COL6A5A8TX70 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC13.51□□□□□ -0.25
COL6A5A8TX70 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC13.51□□□□□ -0.25
COL6A5A8TX70 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms