Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
LIMCH1Q9UPQ0 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
LIMCH1Q9UPQ0 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
LIMCH1Q9UPQ0 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC20.82■□□□□ 0.92
LIMCH1Q9UPQ0 NF2-208ENST00000403435 2568 ntTSL 5 BASIC20.82■□□□□ 0.92
LIMCH1Q9UPQ0 AL121761.2-201ENST00000598007 1648 ntBASIC20.82■□□□□ 0.92
LIMCH1Q9UPQ0 Z83836.1-201ENST00000624605 1642 ntBASIC20.82■□□□□ 0.92
LIMCH1Q9UPQ0 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
LIMCH1Q9UPQ0 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
LIMCH1Q9UPQ0 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
LIMCH1Q9UPQ0 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LIMCH1Q9UPQ0 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LIMCH1Q9UPQ0 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
LIMCH1Q9UPQ0 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC20.81■□□□□ 0.92
LIMCH1Q9UPQ0 AC097374.2-201ENST00000618617 1306 ntBASIC20.81■□□□□ 0.92
LIMCH1Q9UPQ0 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
LIMCH1Q9UPQ0 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LIMCH1Q9UPQ0 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
LIMCH1Q9UPQ0 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LIMCH1Q9UPQ0 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
LIMCH1Q9UPQ0 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LIMCH1Q9UPQ0 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
LIMCH1Q9UPQ0 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
LIMCH1Q9UPQ0 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LIMCH1Q9UPQ0 SPDYE13P-201ENST00000445314 798 ntBASIC20.81■□□□□ 0.92
LIMCH1Q9UPQ0 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC20.81■□□□□ 0.92
LIMCH1Q9UPQ0 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC20.81■□□□□ 0.92
LIMCH1Q9UPQ0 WDR6-223ENST00000627177 207 ntTSL 2 BASIC20.81■□□□□ 0.92
LIMCH1Q9UPQ0 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC20.81■□□□□ 0.92
LIMCH1Q9UPQ0 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
LIMCH1Q9UPQ0 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC20.81■□□□□ 0.92
LIMCH1Q9UPQ0 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
LIMCH1Q9UPQ0 ADM-208ENST00000534464 1640 ntTSL 2 BASIC20.81■□□□□ 0.92
LIMCH1Q9UPQ0 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
LIMCH1Q9UPQ0 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
LIMCH1Q9UPQ0 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC20.81■□□□□ 0.92
LIMCH1Q9UPQ0 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC20.81■□□□□ 0.92
LIMCH1Q9UPQ0 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
LIMCH1Q9UPQ0 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
LIMCH1Q9UPQ0 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
LIMCH1Q9UPQ0 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
LIMCH1Q9UPQ0 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
LIMCH1Q9UPQ0 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC20.8■□□□□ 0.92
LIMCH1Q9UPQ0 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC20.8■□□□□ 0.92
LIMCH1Q9UPQ0 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC20.8■□□□□ 0.92
LIMCH1Q9UPQ0 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC20.8■□□□□ 0.92
LIMCH1Q9UPQ0 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
LIMCH1Q9UPQ0 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
LIMCH1Q9UPQ0 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
LIMCH1Q9UPQ0 AC104076.2-201ENST00000448912 469 ntBASIC20.8■□□□□ 0.92
LIMCH1Q9UPQ0 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC20.8■□□□□ 0.92
LIMCH1Q9UPQ0 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
LIMCH1Q9UPQ0 RBM42-202ENST00000586618 771 ntTSL 3 BASIC20.8■□□□□ 0.92
LIMCH1Q9UPQ0 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
LIMCH1Q9UPQ0 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
LIMCH1Q9UPQ0 OR6D1P-202ENST00000641007 5290 ntBASIC20.8■□□□□ 0.92
LIMCH1Q9UPQ0 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
LIMCH1Q9UPQ0 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
LIMCH1Q9UPQ0 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
LIMCH1Q9UPQ0 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC20.79■□□□□ 0.92
LIMCH1Q9UPQ0 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
LIMCH1Q9UPQ0 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
LIMCH1Q9UPQ0 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC20.79■□□□□ 0.92
LIMCH1Q9UPQ0 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
LIMCH1Q9UPQ0 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC20.79■□□□□ 0.92
LIMCH1Q9UPQ0 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC20.79■□□□□ 0.92
LIMCH1Q9UPQ0 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
LIMCH1Q9UPQ0 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC20.79■□□□□ 0.92
LIMCH1Q9UPQ0 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC20.79■□□□□ 0.92
LIMCH1Q9UPQ0 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC20.79■□□□□ 0.92
LIMCH1Q9UPQ0 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
LIMCH1Q9UPQ0 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
LIMCH1Q9UPQ0 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
LIMCH1Q9UPQ0 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
LIMCH1Q9UPQ0 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
LIMCH1Q9UPQ0 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC20.79■□□□□ 0.92
LIMCH1Q9UPQ0 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
LIMCH1Q9UPQ0 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC20.79■□□□□ 0.92
LIMCH1Q9UPQ0 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC20.79■□□□□ 0.92
LIMCH1Q9UPQ0 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
LIMCH1Q9UPQ0 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
LIMCH1Q9UPQ0 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
LIMCH1Q9UPQ0 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC20.79■□□□□ 0.92
LIMCH1Q9UPQ0 AC099398.1-201ENST00000567919 2776 ntBASIC20.79■□□□□ 0.92
LIMCH1Q9UPQ0 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
LIMCH1Q9UPQ0 TBC1D3P5-201ENST00000579401 1545 ntBASIC20.78■□□□□ 0.92
LIMCH1Q9UPQ0 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC20.78■□□□□ 0.92
LIMCH1Q9UPQ0 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
LIMCH1Q9UPQ0 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
LIMCH1Q9UPQ0 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
LIMCH1Q9UPQ0 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC20.78■□□□□ 0.92
LIMCH1Q9UPQ0 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC20.78■□□□□ 0.92
LIMCH1Q9UPQ0 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
LIMCH1Q9UPQ0 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
LIMCH1Q9UPQ0 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
LIMCH1Q9UPQ0 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
LIMCH1Q9UPQ0 AC010460.3-201ENST00000511359 1579 ntBASIC20.78■□□□□ 0.92
LIMCH1Q9UPQ0 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC20.78■□□□□ 0.92
LIMCH1Q9UPQ0 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
LIMCH1Q9UPQ0 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms