Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AC148477.5-201ENST00000625164 1645 ntBASIC17.76■□□□□ 0.43
LHX3Q9UBR4 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
LHX3Q9UBR4 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC17.76■□□□□ 0.43
LHX3Q9UBR4 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LHX3Q9UBR4 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
LHX3Q9UBR4 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
LHX3Q9UBR4 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC17.76■□□□□ 0.43
LHX3Q9UBR4 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LHX3Q9UBR4 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC17.76■□□□□ 0.43
LHX3Q9UBR4 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC17.76■□□□□ 0.43
LHX3Q9UBR4 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC17.76■□□□□ 0.43
LHX3Q9UBR4 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
LHX3Q9UBR4 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LHX3Q9UBR4 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
LHX3Q9UBR4 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC17.76■□□□□ 0.43
LHX3Q9UBR4 MYCLP1-201ENST00000372451 1075 ntBASIC17.76■□□□□ 0.43
LHX3Q9UBR4 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC17.76■□□□□ 0.43
LHX3Q9UBR4 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC17.76■□□□□ 0.43
LHX3Q9UBR4 AC009078.2-202ENST00000463353 338 ntBASIC17.76■□□□□ 0.43
LHX3Q9UBR4 BX005266.1-201ENST00000473402 457 ntBASIC17.76■□□□□ 0.43
LHX3Q9UBR4 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
LHX3Q9UBR4 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC17.76■□□□□ 0.43
LHX3Q9UBR4 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LHX3Q9UBR4 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC17.76■□□□□ 0.43
LHX3Q9UBR4 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LHX3Q9UBR4 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
LHX3Q9UBR4 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LHX3Q9UBR4 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC17.76■□□□□ 0.43
LHX3Q9UBR4 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC17.76■□□□□ 0.43
LHX3Q9UBR4 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LHX3Q9UBR4 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC17.76■□□□□ 0.43
LHX3Q9UBR4 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
LHX3Q9UBR4 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
LHX3Q9UBR4 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
LHX3Q9UBR4 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LHX3Q9UBR4 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
LHX3Q9UBR4 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
LHX3Q9UBR4 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LHX3Q9UBR4 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LHX3Q9UBR4 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC17.75■□□□□ 0.43
LHX3Q9UBR4 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LHX3Q9UBR4 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
LHX3Q9UBR4 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC17.75■□□□□ 0.43
LHX3Q9UBR4 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
LHX3Q9UBR4 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
LHX3Q9UBR4 STK19B-204ENST00000512515 211 ntBASIC17.75■□□□□ 0.43
LHX3Q9UBR4 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
LHX3Q9UBR4 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC17.75■□□□□ 0.43
LHX3Q9UBR4 CALM3-211ENST00000598871 561 ntTSL 4 BASIC17.75■□□□□ 0.43
LHX3Q9UBR4 AL139327.4-201ENST00000612362 153 ntBASIC17.75■□□□□ 0.43
LHX3Q9UBR4 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC17.75■□□□□ 0.43
LHX3Q9UBR4 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LHX3Q9UBR4 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LHX3Q9UBR4 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC17.75■□□□□ 0.43
LHX3Q9UBR4 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
LHX3Q9UBR4 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC17.75■□□□□ 0.43
LHX3Q9UBR4 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC17.75■□□□□ 0.43
LHX3Q9UBR4 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LHX3Q9UBR4 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
LHX3Q9UBR4 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
LHX3Q9UBR4 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
LHX3Q9UBR4 AC009336.1-201ENST00000608941 1553 ntBASIC17.74■□□□□ 0.43
LHX3Q9UBR4 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC17.74■□□□□ 0.43
LHX3Q9UBR4 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LHX3Q9UBR4 MCC-208ENST00000514701 2855 ntTSL 2 BASIC17.74■□□□□ 0.43
LHX3Q9UBR4 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
LHX3Q9UBR4 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC17.74■□□□□ 0.43
LHX3Q9UBR4 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
LHX3Q9UBR4 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
LHX3Q9UBR4 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC17.74■□□□□ 0.43
LHX3Q9UBR4 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC17.74■□□□□ 0.43
LHX3Q9UBR4 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LHX3Q9UBR4 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC17.74■□□□□ 0.43
LHX3Q9UBR4 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
LHX3Q9UBR4 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
LHX3Q9UBR4 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC17.74■□□□□ 0.43
LHX3Q9UBR4 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
LHX3Q9UBR4 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC17.74■□□□□ 0.43
LHX3Q9UBR4 MRPL3P1-201ENST00000400109 1033 ntBASIC17.74■□□□□ 0.43
LHX3Q9UBR4 AL020989.1-201ENST00000422979 469 ntBASIC17.74■□□□□ 0.43
LHX3Q9UBR4 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC17.74■□□□□ 0.43
LHX3Q9UBR4 FAM197Y8-203ENST00000450145 560 ntBASIC17.74■□□□□ 0.43
LHX3Q9UBR4 SCARNA2-201ENST00000458748 420 ntBASIC17.74■□□□□ 0.43
LHX3Q9UBR4 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC17.74■□□□□ 0.43
LHX3Q9UBR4 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC17.74■□□□□ 0.43
LHX3Q9UBR4 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC17.74■□□□□ 0.43
LHX3Q9UBR4 AC021087.4-201ENST00000563761 564 ntBASIC17.74■□□□□ 0.43
LHX3Q9UBR4 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC17.74■□□□□ 0.43
LHX3Q9UBR4 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LHX3Q9UBR4 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC17.74■□□□□ 0.43
LHX3Q9UBR4 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC17.74■□□□□ 0.43
LHX3Q9UBR4 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LHX3Q9UBR4 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
LHX3Q9UBR4 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC17.74■□□□□ 0.43
LHX3Q9UBR4 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC17.74■□□□□ 0.43
LHX3Q9UBR4 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LHX3Q9UBR4 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
LHX3Q9UBR4 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
LHX3Q9UBR4 AC004817.3-201ENST00000602957 2129 ntBASIC17.74■□□□□ 0.43
LHX3Q9UBR4 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC17.74■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 59.2 ms