Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC15.45■□□□□ 0.06
NKX3-1Q99801 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
NKX3-1Q99801 AC116562.4-202ENST00000641738 218 ntBASIC15.45■□□□□ 0.06
NKX3-1Q99801 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC15.45■□□□□ 0.06
NKX3-1Q99801 LINC00304-203ENST00000565008 1864 ntBASIC15.45■□□□□ 0.06
NKX3-1Q99801 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC15.45■□□□□ 0.06
NKX3-1Q99801 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC15.45■□□□□ 0.06
NKX3-1Q99801 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
NKX3-1Q99801 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
NKX3-1Q99801 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC15.45■□□□□ 0.06
NKX3-1Q99801 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC15.45■□□□□ 0.06
NKX3-1Q99801 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
NKX3-1Q99801 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC15.45■□□□□ 0.06
NKX3-1Q99801 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC15.45■□□□□ 0.06
NKX3-1Q99801 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
NKX3-1Q99801 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
NKX3-1Q99801 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC15.45■□□□□ 0.06
NKX3-1Q99801 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
NKX3-1Q99801 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC15.45■□□□□ 0.06
NKX3-1Q99801 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC15.45■□□□□ 0.06
NKX3-1Q99801 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC15.45■□□□□ 0.06
NKX3-1Q99801 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC15.44■□□□□ 0.06
NKX3-1Q99801 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
NKX3-1Q99801 AC133963.1-201ENST00000504166 1679 ntBASIC15.44■□□□□ 0.06
NKX3-1Q99801 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
NKX3-1Q99801 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
NKX3-1Q99801 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
NKX3-1Q99801 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
NKX3-1Q99801 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
NKX3-1Q99801 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
NKX3-1Q99801 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
NKX3-1Q99801 LINC00167-201ENST00000530583 1419 ntBASIC15.44■□□□□ 0.06
NKX3-1Q99801 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
NKX3-1Q99801 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC15.44■□□□□ 0.06
NKX3-1Q99801 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
NKX3-1Q99801 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
NKX3-1Q99801 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC15.44■□□□□ 0.06
NKX3-1Q99801 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
NKX3-1Q99801 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
NKX3-1Q99801 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
NKX3-1Q99801 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
NKX3-1Q99801 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
NKX3-1Q99801 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
NKX3-1Q99801 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
NKX3-1Q99801 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC15.44■□□□□ 0.06
NKX3-1Q99801 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC15.44■□□□□ 0.06
NKX3-1Q99801 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
NKX3-1Q99801 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC15.44■□□□□ 0.06
NKX3-1Q99801 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
NKX3-1Q99801 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
NKX3-1Q99801 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
NKX3-1Q99801 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC15.44■□□□□ 0.06
NKX3-1Q99801 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
NKX3-1Q99801 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC15.44■□□□□ 0.06
NKX3-1Q99801 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC15.44■□□□□ 0.06
NKX3-1Q99801 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
NKX3-1Q99801 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC15.44■□□□□ 0.06
NKX3-1Q99801 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
NKX3-1Q99801 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC15.44■□□□□ 0.06
NKX3-1Q99801 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC15.44■□□□□ 0.06
NKX3-1Q99801 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
NKX3-1Q99801 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
NKX3-1Q99801 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
NKX3-1Q99801 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
NKX3-1Q99801 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC15.44■□□□□ 0.06
NKX3-1Q99801 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
NKX3-1Q99801 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
NKX3-1Q99801 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
NKX3-1Q99801 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC15.44■□□□□ 0.06
NKX3-1Q99801 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC15.44■□□□□ 0.06
NKX3-1Q99801 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
NKX3-1Q99801 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC15.44■□□□□ 0.06
NKX3-1Q99801 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
NKX3-1Q99801 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
NKX3-1Q99801 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
NKX3-1Q99801 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC15.43■□□□□ 0.06
NKX3-1Q99801 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
NKX3-1Q99801 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC15.43■□□□□ 0.06
NKX3-1Q99801 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC15.43■□□□□ 0.06
NKX3-1Q99801 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
NKX3-1Q99801 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
NKX3-1Q99801 REXO1L11P-201ENST00000620964 1927 ntBASIC15.43■□□□□ 0.06
NKX3-1Q99801 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
NKX3-1Q99801 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
NKX3-1Q99801 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC15.43■□□□□ 0.06
NKX3-1Q99801 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
NKX3-1Q99801 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
NKX3-1Q99801 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
NKX3-1Q99801 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC15.43■□□□□ 0.06
NKX3-1Q99801 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
NKX3-1Q99801 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC15.43■□□□□ 0.06
NKX3-1Q99801 Telomerase-vert.1-201ENST00000363312 438 ntBASIC15.43■□□□□ 0.06
NKX3-1Q99801 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
NKX3-1Q99801 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC15.43■□□□□ 0.06
NKX3-1Q99801 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC15.43■□□□□ 0.06
NKX3-1Q99801 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC15.43■□□□□ 0.06
NKX3-1Q99801 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC15.43■□□□□ 0.06
NKX3-1Q99801 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC15.43■□□□□ 0.06
NKX3-1Q99801 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC15.43■□□□□ 0.06
NKX3-1Q99801 REEP1-209ENST00000541910 969 ntTSL 2 BASIC15.43■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms