Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 AC064862.7-201ENST00000604520 867 ntBASIC18.15■□□□□ 0.5
SKA1Q96BD8 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC18.15■□□□□ 0.5
SKA1Q96BD8 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
SKA1Q96BD8 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
SKA1Q96BD8 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC18.15■□□□□ 0.5
SKA1Q96BD8 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC18.15■□□□□ 0.5
SKA1Q96BD8 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SKA1Q96BD8 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SKA1Q96BD8 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SKA1Q96BD8 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC18.15■□□□□ 0.5
SKA1Q96BD8 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
SKA1Q96BD8 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.5
SKA1Q96BD8 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC18.14■□□□□ 0.5
SKA1Q96BD8 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC18.14■□□□□ 0.5
SKA1Q96BD8 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
SKA1Q96BD8 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SKA1Q96BD8 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SKA1Q96BD8 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
SKA1Q96BD8 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SKA1Q96BD8 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SKA1Q96BD8 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
SKA1Q96BD8 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
SKA1Q96BD8 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SKA1Q96BD8 POM121L3P-201ENST00000419331 1163 ntBASIC18.14■□□□□ 0.49
SKA1Q96BD8 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC18.14■□□□□ 0.49
SKA1Q96BD8 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC18.14■□□□□ 0.49
SKA1Q96BD8 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
SKA1Q96BD8 RN7SL606P-201ENST00000472779 293 ntBASIC18.14■□□□□ 0.49
SKA1Q96BD8 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SKA1Q96BD8 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC18.14■□□□□ 0.49
SKA1Q96BD8 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC18.14■□□□□ 0.49
SKA1Q96BD8 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC18.14■□□□□ 0.49
SKA1Q96BD8 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
SKA1Q96BD8 AL121912.1-201ENST00000603683 238 ntBASIC18.14■□□□□ 0.49
SKA1Q96BD8 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC18.14■□□□□ 0.49
SKA1Q96BD8 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SKA1Q96BD8 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC18.14■□□□□ 0.49
SKA1Q96BD8 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC18.14■□□□□ 0.49
SKA1Q96BD8 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
SKA1Q96BD8 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
SKA1Q96BD8 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SKA1Q96BD8 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
SKA1Q96BD8 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SKA1Q96BD8 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
SKA1Q96BD8 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC18.14■□□□□ 0.49
SKA1Q96BD8 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC18.14■□□□□ 0.49
SKA1Q96BD8 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SKA1Q96BD8 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SKA1Q96BD8 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SKA1Q96BD8 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
SKA1Q96BD8 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC18.14■□□□□ 0.49
SKA1Q96BD8 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC18.13■□□□□ 0.49
SKA1Q96BD8 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC18.13■□□□□ 0.49
SKA1Q96BD8 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC18.13■□□□□ 0.49
SKA1Q96BD8 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SKA1Q96BD8 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SKA1Q96BD8 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC18.13■□□□□ 0.49
SKA1Q96BD8 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC18.13■□□□□ 0.49
SKA1Q96BD8 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
SKA1Q96BD8 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SKA1Q96BD8 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SKA1Q96BD8 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC18.13■□□□□ 0.49
SKA1Q96BD8 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
SKA1Q96BD8 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
SKA1Q96BD8 IGHV3-47-201ENST00000425060 335 ntBASIC18.13■□□□□ 0.49
SKA1Q96BD8 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SKA1Q96BD8 FICD-205ENST00000552758 603 ntTSL 2 BASIC18.13■□□□□ 0.49
SKA1Q96BD8 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC18.13■□□□□ 0.49
SKA1Q96BD8 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC18.13■□□□□ 0.49
SKA1Q96BD8 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
SKA1Q96BD8 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC18.13■□□□□ 0.49
SKA1Q96BD8 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SKA1Q96BD8 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SKA1Q96BD8 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC18.13■□□□□ 0.49
SKA1Q96BD8 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SKA1Q96BD8 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SKA1Q96BD8 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC18.13■□□□□ 0.49
SKA1Q96BD8 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SKA1Q96BD8 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
SKA1Q96BD8 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SKA1Q96BD8 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SKA1Q96BD8 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SKA1Q96BD8 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SKA1Q96BD8 AD000864.1-201ENST00000624076 2295 ntBASIC18.12■□□□□ 0.49
SKA1Q96BD8 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SKA1Q96BD8 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC18.12■□□□□ 0.49
SKA1Q96BD8 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC18.12■□□□□ 0.49
SKA1Q96BD8 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
SKA1Q96BD8 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC18.12■□□□□ 0.49
SKA1Q96BD8 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SKA1Q96BD8 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC18.12■□□□□ 0.49
SKA1Q96BD8 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
SKA1Q96BD8 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
SKA1Q96BD8 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SKA1Q96BD8 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
SKA1Q96BD8 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SKA1Q96BD8 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC18.12■□□□□ 0.49
SKA1Q96BD8 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC18.12■□□□□ 0.49
SKA1Q96BD8 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
SKA1Q96BD8 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC18.12■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms