Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
KRT40Q6A162 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC20.46■□□□□ 0.87
KRT40Q6A162 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
KRT40Q6A162 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC20.46■□□□□ 0.87
KRT40Q6A162 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
KRT40Q6A162 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
KRT40Q6A162 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC20.46■□□□□ 0.87
KRT40Q6A162 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC20.46■□□□□ 0.87
KRT40Q6A162 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
KRT40Q6A162 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
KRT40Q6A162 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
KRT40Q6A162 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
KRT40Q6A162 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC20.46■□□□□ 0.87
KRT40Q6A162 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC20.46■□□□□ 0.87
KRT40Q6A162 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
KRT40Q6A162 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
KRT40Q6A162 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
KRT40Q6A162 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC20.46■□□□□ 0.87
KRT40Q6A162 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC20.46■□□□□ 0.87
KRT40Q6A162 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC20.46■□□□□ 0.87
KRT40Q6A162 AC090616.6-201ENST00000582640 721 ntBASIC20.46■□□□□ 0.87
KRT40Q6A162 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
KRT40Q6A162 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC20.46■□□□□ 0.87
KRT40Q6A162 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
KRT40Q6A162 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
KRT40Q6A162 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
KRT40Q6A162 BOC-212ENST00000485230 2173 ntTSL 2 BASIC20.46■□□□□ 0.87
KRT40Q6A162 BCL2-203ENST00000589955 5011 ntBASIC20.46■□□□□ 0.87
KRT40Q6A162 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
KRT40Q6A162 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
KRT40Q6A162 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
KRT40Q6A162 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
KRT40Q6A162 AC010460.3-201ENST00000511359 1579 ntBASIC20.46■□□□□ 0.87
KRT40Q6A162 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
KRT40Q6A162 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
KRT40Q6A162 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC20.45■□□□□ 0.86
KRT40Q6A162 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
KRT40Q6A162 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
KRT40Q6A162 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
KRT40Q6A162 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC20.45■□□□□ 0.86
KRT40Q6A162 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
KRT40Q6A162 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
KRT40Q6A162 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
KRT40Q6A162 CEP83-AS1-201ENST00000623122 2482 ntBASIC20.45■□□□□ 0.86
KRT40Q6A162 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
KRT40Q6A162 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
KRT40Q6A162 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
KRT40Q6A162 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
KRT40Q6A162 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
KRT40Q6A162 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC20.45■□□□□ 0.86
KRT40Q6A162 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
KRT40Q6A162 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
KRT40Q6A162 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
KRT40Q6A162 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
KRT40Q6A162 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
KRT40Q6A162 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC20.45■□□□□ 0.86
KRT40Q6A162 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC20.45■□□□□ 0.86
KRT40Q6A162 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
KRT40Q6A162 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
KRT40Q6A162 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
KRT40Q6A162 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC20.45■□□□□ 0.86
KRT40Q6A162 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC20.45■□□□□ 0.86
KRT40Q6A162 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
KRT40Q6A162 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
KRT40Q6A162 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
KRT40Q6A162 ADM-208ENST00000534464 1640 ntTSL 2 BASIC20.45■□□□□ 0.86
KRT40Q6A162 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC20.45■□□□□ 0.86
KRT40Q6A162 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
KRT40Q6A162 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
KRT40Q6A162 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC20.45■□□□□ 0.86
KRT40Q6A162 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
KRT40Q6A162 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
KRT40Q6A162 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC20.44■□□□□ 0.86
KRT40Q6A162 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC20.44■□□□□ 0.86
KRT40Q6A162 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC20.44■□□□□ 0.86
KRT40Q6A162 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
KRT40Q6A162 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC20.44■□□□□ 0.86
KRT40Q6A162 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
KRT40Q6A162 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
KRT40Q6A162 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC20.44■□□□□ 0.86
KRT40Q6A162 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
KRT40Q6A162 AL138688.1-201ENST00000624851 1594 ntBASIC20.44■□□□□ 0.86
KRT40Q6A162 AC079776.4-201ENST00000511039 504 ntBASIC20.44■□□□□ 0.86
KRT40Q6A162 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC20.44■□□□□ 0.86
KRT40Q6A162 AP002414.4-201ENST00000589764 1148 ntBASIC20.44■□□□□ 0.86
KRT40Q6A162 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC20.44■□□□□ 0.86
KRT40Q6A162 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC20.44■□□□□ 0.86
KRT40Q6A162 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
KRT40Q6A162 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC20.44■□□□□ 0.86
KRT40Q6A162 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC20.44■□□□□ 0.86
KRT40Q6A162 AC097374.2-201ENST00000618617 1306 ntBASIC20.44■□□□□ 0.86
KRT40Q6A162 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC20.44■□□□□ 0.86
KRT40Q6A162 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
KRT40Q6A162 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC20.44■□□□□ 0.86
KRT40Q6A162 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
KRT40Q6A162 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC20.44■□□□□ 0.86
KRT40Q6A162 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
KRT40Q6A162 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC20.44■□□□□ 0.86
KRT40Q6A162 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
KRT40Q6A162 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 45 ms