Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CCDC58Q4VC31 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CCDC58Q4VC31 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC15.85■□□□□ 0.13
CCDC58Q4VC31 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.13
CCDC58Q4VC31 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
CCDC58Q4VC31 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
CCDC58Q4VC31 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
CCDC58Q4VC31 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CCDC58Q4VC31 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CCDC58Q4VC31 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CCDC58Q4VC31 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CCDC58Q4VC31 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.13
CCDC58Q4VC31 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CCDC58Q4VC31 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
CCDC58Q4VC31 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CCDC58Q4VC31 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
CCDC58Q4VC31 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
CCDC58Q4VC31 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC15.84■□□□□ 0.13
CCDC58Q4VC31 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC15.84■□□□□ 0.13
CCDC58Q4VC31 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC15.84■□□□□ 0.13
CCDC58Q4VC31 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC15.84■□□□□ 0.13
CCDC58Q4VC31 LINC00304-203ENST00000565008 1864 ntBASIC15.84■□□□□ 0.13
CCDC58Q4VC31 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
CCDC58Q4VC31 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC15.84■□□□□ 0.13
CCDC58Q4VC31 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CCDC58Q4VC31 PCDHB17P-201ENST00000539533 2393 ntBASIC15.84■□□□□ 0.13
CCDC58Q4VC31 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC15.84■□□□□ 0.13
CCDC58Q4VC31 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
CCDC58Q4VC31 AC132938.6-201ENST00000623828 1655 ntBASIC15.84■□□□□ 0.13
CCDC58Q4VC31 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CCDC58Q4VC31 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CCDC58Q4VC31 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CCDC58Q4VC31 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC15.84■□□□□ 0.13
CCDC58Q4VC31 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC15.84■□□□□ 0.13
CCDC58Q4VC31 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC15.84■□□□□ 0.13
CCDC58Q4VC31 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC15.84■□□□□ 0.13
CCDC58Q4VC31 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC15.84■□□□□ 0.13
CCDC58Q4VC31 AC112497.1-201ENST00000624824 639 ntBASIC15.84■□□□□ 0.13
CCDC58Q4VC31 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
CCDC58Q4VC31 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CCDC58Q4VC31 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CCDC58Q4VC31 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CCDC58Q4VC31 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC15.84■□□□□ 0.13
CCDC58Q4VC31 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC15.84■□□□□ 0.13
CCDC58Q4VC31 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC15.84■□□□□ 0.13
CCDC58Q4VC31 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
CCDC58Q4VC31 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC15.84■□□□□ 0.13
CCDC58Q4VC31 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC15.84■□□□□ 0.13
CCDC58Q4VC31 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
CCDC58Q4VC31 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.13
CCDC58Q4VC31 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.13
CCDC58Q4VC31 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
CCDC58Q4VC31 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
CCDC58Q4VC31 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC15.83■□□□□ 0.13
CCDC58Q4VC31 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
CCDC58Q4VC31 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
CCDC58Q4VC31 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
CCDC58Q4VC31 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CCDC58Q4VC31 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
CCDC58Q4VC31 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC15.83■□□□□ 0.12
CCDC58Q4VC31 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC15.83■□□□□ 0.12
CCDC58Q4VC31 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CCDC58Q4VC31 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CCDC58Q4VC31 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
CCDC58Q4VC31 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC15.83■□□□□ 0.12
CCDC58Q4VC31 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC15.83■□□□□ 0.12
CCDC58Q4VC31 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CCDC58Q4VC31 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
CCDC58Q4VC31 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC15.83■□□□□ 0.12
CCDC58Q4VC31 FDX2-206ENST00000492239 773 ntTSL 2 BASIC15.83■□□□□ 0.12
CCDC58Q4VC31 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
CCDC58Q4VC31 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC15.83■□□□□ 0.12
CCDC58Q4VC31 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC15.83■□□□□ 0.12
CCDC58Q4VC31 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC15.83■□□□□ 0.12
CCDC58Q4VC31 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC15.83■□□□□ 0.12
CCDC58Q4VC31 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC15.83■□□□□ 0.12
CCDC58Q4VC31 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC15.83■□□□□ 0.12
CCDC58Q4VC31 MMD2-204ENST00000612910 778 ntTSL 5 BASIC15.83■□□□□ 0.12
CCDC58Q4VC31 CR769767.2-201ENST00000622735 460 ntBASIC15.83■□□□□ 0.12
CCDC58Q4VC31 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CCDC58Q4VC31 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
CCDC58Q4VC31 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CCDC58Q4VC31 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CCDC58Q4VC31 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
CCDC58Q4VC31 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC15.83■□□□□ 0.12
CCDC58Q4VC31 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CCDC58Q4VC31 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.12
CCDC58Q4VC31 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.12
CCDC58Q4VC31 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
CCDC58Q4VC31 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
CCDC58Q4VC31 TCAF2P1-201ENST00000291129 2421 ntBASIC15.83■□□□□ 0.12
CCDC58Q4VC31 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.12
CCDC58Q4VC31 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CCDC58Q4VC31 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CCDC58Q4VC31 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CCDC58Q4VC31 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
CCDC58Q4VC31 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC15.82■□□□□ 0.12
CCDC58Q4VC31 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC15.82■□□□□ 0.12
CCDC58Q4VC31 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CCDC58Q4VC31 AC100803.2-201ENST00000562459 1963 ntBASIC15.82■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms