Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC18.55■□□□□ 0.56
CHD9Q3L8U1 AC022494.1-201ENST00000466044 728 ntBASIC18.55■□□□□ 0.56
CHD9Q3L8U1 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC18.55■□□□□ 0.56
CHD9Q3L8U1 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CHD9Q3L8U1 RAB34-224ENST00000636513 888 ntTSL 5 BASIC18.55■□□□□ 0.56
CHD9Q3L8U1 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CHD9Q3L8U1 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CHD9Q3L8U1 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
CHD9Q3L8U1 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC18.55■□□□□ 0.56
CHD9Q3L8U1 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.55■□□□□ 0.56
CHD9Q3L8U1 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CHD9Q3L8U1 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC18.55■□□□□ 0.56
CHD9Q3L8U1 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CHD9Q3L8U1 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CHD9Q3L8U1 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CHD9Q3L8U1 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC18.55■□□□□ 0.56
CHD9Q3L8U1 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC18.55■□□□□ 0.56
CHD9Q3L8U1 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC18.55■□□□□ 0.56
CHD9Q3L8U1 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CHD9Q3L8U1 COQ6-210ENST00000554920 649 ntTSL 3 BASIC18.55■□□□□ 0.56
CHD9Q3L8U1 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
CHD9Q3L8U1 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
CHD9Q3L8U1 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC18.54■□□□□ 0.56
CHD9Q3L8U1 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC18.54■□□□□ 0.56
CHD9Q3L8U1 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
CHD9Q3L8U1 DDX43P3-201ENST00000441064 443 ntBASIC18.54■□□□□ 0.56
CHD9Q3L8U1 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC18.54■□□□□ 0.56
CHD9Q3L8U1 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CHD9Q3L8U1 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CHD9Q3L8U1 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CHD9Q3L8U1 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC18.54■□□□□ 0.56
CHD9Q3L8U1 COX5BP8-201ENST00000416911 349 ntBASIC18.54■□□□□ 0.56
CHD9Q3L8U1 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CHD9Q3L8U1 AC140878.1-201ENST00000565277 250 ntBASIC18.54■□□□□ 0.56
CHD9Q3L8U1 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC18.54■□□□□ 0.56
CHD9Q3L8U1 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC18.54■□□□□ 0.56
CHD9Q3L8U1 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CHD9Q3L8U1 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
CHD9Q3L8U1 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CHD9Q3L8U1 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CHD9Q3L8U1 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CHD9Q3L8U1 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
CHD9Q3L8U1 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CHD9Q3L8U1 FALEC-201ENST00000416894 566 ntTSL 3 BASIC18.53■□□□□ 0.56
CHD9Q3L8U1 AC125807.1-201ENST00000483097 614 ntBASIC18.53■□□□□ 0.56
CHD9Q3L8U1 TSFM-210ENST00000550559 897 ntTSL 5 BASIC18.53■□□□□ 0.56
CHD9Q3L8U1 AC093010.1-201ENST00000473625 1624 ntBASIC18.53■□□□□ 0.56
CHD9Q3L8U1 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
CHD9Q3L8U1 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC18.53■□□□□ 0.56
CHD9Q3L8U1 PI4KAP1-204ENST00000612579 1703 ntBASIC18.53■□□□□ 0.56
CHD9Q3L8U1 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CHD9Q3L8U1 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC18.53■□□□□ 0.56
CHD9Q3L8U1 AC079140.1-201ENST00000508039 487 ntBASIC18.53■□□□□ 0.56
CHD9Q3L8U1 AC097493.3-201ENST00000509725 367 ntBASIC18.53■□□□□ 0.56
CHD9Q3L8U1 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
CHD9Q3L8U1 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CHD9Q3L8U1 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
CHD9Q3L8U1 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CHD9Q3L8U1 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CHD9Q3L8U1 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CHD9Q3L8U1 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CHD9Q3L8U1 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC18.53■□□□□ 0.56
CHD9Q3L8U1 AC009336.1-201ENST00000608941 1553 ntBASIC18.52■□□□□ 0.56
CHD9Q3L8U1 GOLGA6L11P-201ENST00000417252 1298 ntBASIC18.52■□□□□ 0.56
CHD9Q3L8U1 RN7SL692P-201ENST00000464677 288 ntBASIC18.52■□□□□ 0.56
CHD9Q3L8U1 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC18.52■□□□□ 0.56
CHD9Q3L8U1 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CHD9Q3L8U1 AL606495.2-201ENST00000605867 535 ntBASIC18.52■□□□□ 0.56
CHD9Q3L8U1 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CHD9Q3L8U1 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CHD9Q3L8U1 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CHD9Q3L8U1 AL590787.1-201ENST00000568856 1315 ntBASIC18.52■□□□□ 0.56
CHD9Q3L8U1 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CHD9Q3L8U1 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC18.52■□□□□ 0.56
CHD9Q3L8U1 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CHD9Q3L8U1 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CHD9Q3L8U1 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CHD9Q3L8U1 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
CHD9Q3L8U1 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC18.52■□□□□ 0.56
CHD9Q3L8U1 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC18.52■□□□□ 0.56
CHD9Q3L8U1 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CHD9Q3L8U1 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
CHD9Q3L8U1 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
CHD9Q3L8U1 AC007064.4-201ENST00000637740 555 ntBASIC18.52■□□□□ 0.56
CHD9Q3L8U1 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CHD9Q3L8U1 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
CHD9Q3L8U1 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
CHD9Q3L8U1 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
CHD9Q3L8U1 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
CHD9Q3L8U1 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC18.52■□□□□ 0.55
CHD9Q3L8U1 AC092580.3-201ENST00000430932 139 ntBASIC18.52■□□□□ 0.55
CHD9Q3L8U1 U91328.1-201ENST00000437528 223 ntBASIC18.52■□□□□ 0.55
CHD9Q3L8U1 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC18.52■□□□□ 0.55
CHD9Q3L8U1 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC18.52■□□□□ 0.55
CHD9Q3L8U1 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC18.51■□□□□ 0.55
CHD9Q3L8U1 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CHD9Q3L8U1 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CHD9Q3L8U1 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC18.51■□□□□ 0.55
CHD9Q3L8U1 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
CHD9Q3L8U1 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC18.51■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms