Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC20.69■□□□□ 0.9
SCN4AP35499 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SCN4AP35499 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SCN4AP35499 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SCN4AP35499 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SCN4AP35499 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SCN4AP35499 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
SCN4AP35499 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC20.68■□□□□ 0.9
SCN4AP35499 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SCN4AP35499 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC20.68■□□□□ 0.9
SCN4AP35499 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SCN4AP35499 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SCN4AP35499 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC20.68■□□□□ 0.9
SCN4AP35499 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
SCN4AP35499 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SCN4AP35499 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SCN4AP35499 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC20.68■□□□□ 0.9
SCN4AP35499 U91328.1-201ENST00000437528 223 ntBASIC20.68■□□□□ 0.9
SCN4AP35499 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC20.68■□□□□ 0.9
SCN4AP35499 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC20.68■□□□□ 0.9
SCN4AP35499 AC107918.2-201ENST00000530817 355 ntBASIC20.68■□□□□ 0.9
SCN4AP35499 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SCN4AP35499 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SCN4AP35499 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
SCN4AP35499 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SCN4AP35499 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC20.68■□□□□ 0.9
SCN4AP35499 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC20.67■□□□□ 0.9
SCN4AP35499 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC20.67■□□□□ 0.9
SCN4AP35499 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SCN4AP35499 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SCN4AP35499 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC20.67■□□□□ 0.9
SCN4AP35499 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC20.67■□□□□ 0.9
SCN4AP35499 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC20.67■□□□□ 0.9
SCN4AP35499 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC20.67■□□□□ 0.9
SCN4AP35499 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SCN4AP35499 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC20.67■□□□□ 0.9
SCN4AP35499 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC20.67■□□□□ 0.9
SCN4AP35499 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC20.67■□□□□ 0.9
SCN4AP35499 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC20.67■□□□□ 0.9
SCN4AP35499 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SCN4AP35499 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SCN4AP35499 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SCN4AP35499 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC20.67■□□□□ 0.9
SCN4AP35499 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SCN4AP35499 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
SCN4AP35499 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
SCN4AP35499 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC20.67■□□□□ 0.9
SCN4AP35499 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SCN4AP35499 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC20.67■□□□□ 0.9
SCN4AP35499 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SCN4AP35499 TSSK5P-201ENST00000423978 907 ntBASIC20.67■□□□□ 0.9
SCN4AP35499 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
SCN4AP35499 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC20.67■□□□□ 0.9
SCN4AP35499 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC20.67■□□□□ 0.9
SCN4AP35499 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC20.67■□□□□ 0.9
SCN4AP35499 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC20.67■□□□□ 0.9
SCN4AP35499 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC20.67■□□□□ 0.9
SCN4AP35499 AL161645.1-201ENST00000622716 1255 ntBASIC20.67■□□□□ 0.9
SCN4AP35499 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
SCN4AP35499 ME2-218ENST00000640965 2476 ntTSL 5 BASIC20.66■□□□□ 0.9
SCN4AP35499 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
SCN4AP35499 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC20.66■□□□□ 0.9
SCN4AP35499 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC20.66■□□□□ 0.9
SCN4AP35499 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SCN4AP35499 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SCN4AP35499 AC100757.3-201ENST00000622361 1406 ntBASIC20.66■□□□□ 0.9
SCN4AP35499 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC20.66■□□□□ 0.9
SCN4AP35499 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SCN4AP35499 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC20.66■□□□□ 0.9
SCN4AP35499 MYCLP1-201ENST00000372451 1075 ntBASIC20.66■□□□□ 0.9
SCN4AP35499 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SCN4AP35499 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC20.66■□□□□ 0.9
SCN4AP35499 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC20.66■□□□□ 0.9
SCN4AP35499 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC20.66■□□□□ 0.9
SCN4AP35499 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
SCN4AP35499 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SCN4AP35499 GNAS-203ENST00000306120 1878 ntBASIC20.66■□□□□ 0.9
SCN4AP35499 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SCN4AP35499 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SCN4AP35499 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SCN4AP35499 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC20.65■□□□□ 0.9
SCN4AP35499 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC20.65■□□□□ 0.9
SCN4AP35499 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC20.65■□□□□ 0.9
SCN4AP35499 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SCN4AP35499 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC20.65■□□□□ 0.9
SCN4AP35499 KRT8P23-201ENST00000560090 1207 ntBASIC20.65■□□□□ 0.9
SCN4AP35499 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC20.65■□□□□ 0.9
SCN4AP35499 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC20.65■□□□□ 0.9
SCN4AP35499 ADM-207ENST00000530439 1839 ntTSL 2 BASIC20.65■□□□□ 0.9
SCN4AP35499 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SCN4AP35499 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SCN4AP35499 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC20.65■□□□□ 0.9
SCN4AP35499 UXT-AS1-201ENST00000590504 1525 ntBASIC20.65■□□□□ 0.9
SCN4AP35499 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC20.65■□□□□ 0.9
SCN4AP35499 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SCN4AP35499 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SCN4AP35499 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
SCN4AP35499 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SCN4AP35499 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
SCN4AP35499 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC20.64■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms