Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
HOXD3P31249 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
HOXD3P31249 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXD3P31249 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
HOXD3P31249 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXD3P31249 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
HOXD3P31249 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXD3P31249 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXD3P31249 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXD3P31249 TP73-AS1-210ENST00000637775 1455 ntBASIC13.68□□□□□ -0.22
HOXD3P31249 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXD3P31249 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC13.68□□□□□ -0.22
HOXD3P31249 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
HOXD3P31249 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXD3P31249 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXD3P31249 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
HOXD3P31249 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXD3P31249 AL354751.1-201ENST00000412768 1863 ntBASIC13.68□□□□□ -0.22
HOXD3P31249 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXD3P31249 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC13.68□□□□□ -0.22
HOXD3P31249 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
HOXD3P31249 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
HOXD3P31249 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXD3P31249 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
HOXD3P31249 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
HOXD3P31249 RCN1P2-201ENST00000398357 915 ntBASIC13.68□□□□□ -0.22
HOXD3P31249 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXD3P31249 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC13.68□□□□□ -0.22
HOXD3P31249 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC13.68□□□□□ -0.22
HOXD3P31249 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC13.68□□□□□ -0.22
HOXD3P31249 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
HOXD3P31249 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC13.68□□□□□ -0.22
HOXD3P31249 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC13.68□□□□□ -0.22
HOXD3P31249 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC13.68□□□□□ -0.22
HOXD3P31249 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC13.68□□□□□ -0.22
HOXD3P31249 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC13.68□□□□□ -0.22
HOXD3P31249 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC13.68□□□□□ -0.22
HOXD3P31249 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC13.68□□□□□ -0.22
HOXD3P31249 AL049840.3-201ENST00000602669 611 ntBASIC13.68□□□□□ -0.22
HOXD3P31249 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC13.68□□□□□ -0.22
HOXD3P31249 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC13.68□□□□□ -0.22
HOXD3P31249 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXD3P31249 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC13.68□□□□□ -0.22
HOXD3P31249 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXD3P31249 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC13.68□□□□□ -0.22
HOXD3P31249 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC13.68□□□□□ -0.22
HOXD3P31249 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
HOXD3P31249 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXD3P31249 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXD3P31249 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXD3P31249 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXD3P31249 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXD3P31249 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
HOXD3P31249 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC13.68□□□□□ -0.22
HOXD3P31249 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC13.68□□□□□ -0.22
HOXD3P31249 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXD3P31249 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
HOXD3P31249 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
HOXD3P31249 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC13.67□□□□□ -0.22
HOXD3P31249 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
HOXD3P31249 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
HOXD3P31249 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC13.67□□□□□ -0.22
HOXD3P31249 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC13.67□□□□□ -0.22
HOXD3P31249 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
HOXD3P31249 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
HOXD3P31249 AC100803.2-201ENST00000562459 1963 ntBASIC13.67□□□□□ -0.22
HOXD3P31249 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
HOXD3P31249 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
HOXD3P31249 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC13.67□□□□□ -0.22
HOXD3P31249 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC13.67□□□□□ -0.22
HOXD3P31249 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
HOXD3P31249 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC13.67□□□□□ -0.22
HOXD3P31249 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
HOXD3P31249 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
HOXD3P31249 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
HOXD3P31249 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
HOXD3P31249 CCS-201ENST00000310190 942 ntTSL 5 BASIC13.67□□□□□ -0.22
HOXD3P31249 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
HOXD3P31249 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC13.67□□□□□ -0.22
HOXD3P31249 HIST2H3DP1-201ENST00000401004 416 ntBASIC13.67□□□□□ -0.22
HOXD3P31249 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
HOXD3P31249 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC13.67□□□□□ -0.22
HOXD3P31249 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC13.67□□□□□ -0.22
HOXD3P31249 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
HOXD3P31249 AC073648.2-201ENST00000510116 352 ntBASIC13.67□□□□□ -0.22
HOXD3P31249 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC13.67□□□□□ -0.22
HOXD3P31249 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC13.67□□□□□ -0.22
HOXD3P31249 MNT-208ENST00000575394 606 ntTSL 4 BASIC13.67□□□□□ -0.22
HOXD3P31249 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC13.67□□□□□ -0.22
HOXD3P31249 AC117500.6-201ENST00000624871 588 ntBASIC13.67□□□□□ -0.22
HOXD3P31249 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC13.67□□□□□ -0.22
HOXD3P31249 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
HOXD3P31249 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
HOXD3P31249 EML3-217ENST00000531557 2509 ntTSL 5 BASIC13.67□□□□□ -0.22
HOXD3P31249 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
HOXD3P31249 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
HOXD3P31249 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
HOXD3P31249 AC243591.1-201ENST00000452967 1364 ntBASIC13.67□□□□□ -0.22
HOXD3P31249 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC13.67□□□□□ -0.22
HOXD3P31249 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC13.67□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms