Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LDLRP01130 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LDLRP01130 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC17.12■□□□□ 0.33
LDLRP01130 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LDLRP01130 AP001094.4-201ENST00000579008 2176 ntBASIC17.12■□□□□ 0.33
LDLRP01130 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
LDLRP01130 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC17.12■□□□□ 0.33
LDLRP01130 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LDLRP01130 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LDLRP01130 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LDLRP01130 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LDLRP01130 NKILA-202ENST00000614771 2598 ntBASIC17.12■□□□□ 0.33
LDLRP01130 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LDLRP01130 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LDLRP01130 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
LDLRP01130 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LDLRP01130 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LDLRP01130 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC17.12■□□□□ 0.33
LDLRP01130 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LDLRP01130 Telomerase-vert.1-201ENST00000363312 438 ntBASIC17.12■□□□□ 0.33
LDLRP01130 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC17.12■□□□□ 0.33
LDLRP01130 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LDLRP01130 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC17.12■□□□□ 0.33
LDLRP01130 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LDLRP01130 FAAHP1-202ENST00000446499 1238 ntBASIC17.12■□□□□ 0.33
LDLRP01130 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC17.12■□□□□ 0.33
LDLRP01130 SKP2-204ENST00000508514 821 ntTSL 3 BASIC17.12■□□□□ 0.33
LDLRP01130 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC17.12■□□□□ 0.33
LDLRP01130 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
LDLRP01130 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LDLRP01130 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC17.12■□□□□ 0.33
LDLRP01130 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LDLRP01130 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LDLRP01130 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
LDLRP01130 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LDLRP01130 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LDLRP01130 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
LDLRP01130 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LDLRP01130 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LDLRP01130 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LDLRP01130 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LDLRP01130 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
LDLRP01130 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LDLRP01130 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LDLRP01130 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LDLRP01130 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
LDLRP01130 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
LDLRP01130 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LDLRP01130 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
LDLRP01130 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LDLRP01130 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC17.11■□□□□ 0.33
LDLRP01130 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LDLRP01130 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LDLRP01130 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LDLRP01130 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LDLRP01130 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
LDLRP01130 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
LDLRP01130 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC17.11■□□□□ 0.33
LDLRP01130 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
LDLRP01130 CKBP1-201ENST00000565489 1086 ntBASIC17.11■□□□□ 0.33
LDLRP01130 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
LDLRP01130 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC17.11■□□□□ 0.33
LDLRP01130 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC17.11■□□□□ 0.33
LDLRP01130 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
LDLRP01130 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
LDLRP01130 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC17.11■□□□□ 0.33
LDLRP01130 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LDLRP01130 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
LDLRP01130 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC17.11■□□□□ 0.33
LDLRP01130 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
LDLRP01130 AC011676.5-201ENST00000624864 2660 ntBASIC17.11■□□□□ 0.33
LDLRP01130 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
LDLRP01130 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC17.11■□□□□ 0.33
LDLRP01130 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
LDLRP01130 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LDLRP01130 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
LDLRP01130 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LDLRP01130 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC17.1■□□□□ 0.33
LDLRP01130 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LDLRP01130 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LDLRP01130 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
LDLRP01130 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC17.1■□□□□ 0.33
LDLRP01130 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC17.1■□□□□ 0.33
LDLRP01130 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC17.1■□□□□ 0.33
LDLRP01130 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LDLRP01130 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC17.1■□□□□ 0.33
LDLRP01130 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LDLRP01130 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC17.1■□□□□ 0.33
LDLRP01130 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC17.1■□□□□ 0.33
LDLRP01130 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
LDLRP01130 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
LDLRP01130 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC17.1■□□□□ 0.33
LDLRP01130 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LDLRP01130 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
LDLRP01130 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LDLRP01130 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LDLRP01130 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
LDLRP01130 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC17.09■□□□□ 0.33
LDLRP01130 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
LDLRP01130 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms