Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC17.36■□□□□ 0.37
VPS4BO75351 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VPS4BO75351 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
VPS4BO75351 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC17.36■□□□□ 0.37
VPS4BO75351 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC17.36■□□□□ 0.37
VPS4BO75351 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
VPS4BO75351 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
VPS4BO75351 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC17.36■□□□□ 0.37
VPS4BO75351 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VPS4BO75351 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VPS4BO75351 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
VPS4BO75351 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC17.36■□□□□ 0.37
VPS4BO75351 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VPS4BO75351 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC17.36■□□□□ 0.37
VPS4BO75351 AC009053.2-201ENST00000563701 2365 ntBASIC17.36■□□□□ 0.37
VPS4BO75351 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VPS4BO75351 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC17.36■□□□□ 0.37
VPS4BO75351 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC17.35■□□□□ 0.37
VPS4BO75351 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
VPS4BO75351 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC17.35■□□□□ 0.37
VPS4BO75351 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
VPS4BO75351 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
VPS4BO75351 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VPS4BO75351 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC17.35■□□□□ 0.37
VPS4BO75351 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VPS4BO75351 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
VPS4BO75351 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
VPS4BO75351 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
VPS4BO75351 LINC00602-201ENST00000629776 2065 ntBASIC17.35■□□□□ 0.37
VPS4BO75351 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC17.35■□□□□ 0.37
VPS4BO75351 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC17.35■□□□□ 0.37
VPS4BO75351 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC17.35■□□□□ 0.37
VPS4BO75351 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC17.35■□□□□ 0.37
VPS4BO75351 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VPS4BO75351 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC17.35■□□□□ 0.37
VPS4BO75351 FAAHP1-202ENST00000446499 1238 ntBASIC17.35■□□□□ 0.37
VPS4BO75351 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
VPS4BO75351 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VPS4BO75351 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC17.35■□□□□ 0.37
VPS4BO75351 FGF14-AS2-201ENST00000606448 1074 ntBASIC17.35■□□□□ 0.37
VPS4BO75351 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
VPS4BO75351 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC17.35■□□□□ 0.37
VPS4BO75351 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC17.35■□□□□ 0.37
VPS4BO75351 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VPS4BO75351 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
VPS4BO75351 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VPS4BO75351 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VPS4BO75351 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VPS4BO75351 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
VPS4BO75351 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
VPS4BO75351 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
VPS4BO75351 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC17.34■□□□□ 0.37
VPS4BO75351 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
VPS4BO75351 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC17.34■□□□□ 0.37
VPS4BO75351 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
VPS4BO75351 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
VPS4BO75351 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
VPS4BO75351 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC17.34■□□□□ 0.37
VPS4BO75351 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
VPS4BO75351 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC17.34■□□□□ 0.37
VPS4BO75351 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
VPS4BO75351 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC17.34■□□□□ 0.37
VPS4BO75351 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
VPS4BO75351 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
VPS4BO75351 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC17.34■□□□□ 0.37
VPS4BO75351 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
VPS4BO75351 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC17.34■□□□□ 0.37
VPS4BO75351 HLA-J-201ENST00000462773 1622 ntBASIC17.34■□□□□ 0.37
VPS4BO75351 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC17.34■□□□□ 0.37
VPS4BO75351 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC17.34■□□□□ 0.37
VPS4BO75351 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC17.34■□□□□ 0.37
VPS4BO75351 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC17.34■□□□□ 0.37
VPS4BO75351 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC17.34■□□□□ 0.37
VPS4BO75351 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
VPS4BO75351 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC17.34■□□□□ 0.37
VPS4BO75351 AC100803.2-201ENST00000562459 1963 ntBASIC17.34■□□□□ 0.37
VPS4BO75351 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC17.34■□□□□ 0.37
VPS4BO75351 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
VPS4BO75351 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC17.34■□□□□ 0.37
VPS4BO75351 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
VPS4BO75351 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC17.34■□□□□ 0.37
VPS4BO75351 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC17.34■□□□□ 0.37
VPS4BO75351 LINC01451-201ENST00000623792 534 ntBASIC17.34■□□□□ 0.37
VPS4BO75351 DFFB-212ENST00000625756 649 ntTSL 5 BASIC17.34■□□□□ 0.37
VPS4BO75351 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
VPS4BO75351 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
VPS4BO75351 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
VPS4BO75351 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
VPS4BO75351 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
VPS4BO75351 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
VPS4BO75351 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC17.33■□□□□ 0.37
VPS4BO75351 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC17.33■□□□□ 0.37
VPS4BO75351 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
VPS4BO75351 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC17.33■□□□□ 0.37
VPS4BO75351 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
VPS4BO75351 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC17.33■□□□□ 0.37
VPS4BO75351 AL121761.2-201ENST00000598007 1648 ntBASIC17.33■□□□□ 0.37
VPS4BO75351 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
VPS4BO75351 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
VPS4BO75351 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms