Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
PROM1O43490 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PROM1O43490 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
PROM1O43490 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC16.8■□□□□ 0.28
PROM1O43490 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PROM1O43490 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
PROM1O43490 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
PROM1O43490 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC16.8■□□□□ 0.28
PROM1O43490 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC16.8■□□□□ 0.28
PROM1O43490 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
PROM1O43490 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PROM1O43490 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PROM1O43490 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
PROM1O43490 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PROM1O43490 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
PROM1O43490 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC16.79■□□□□ 0.28
PROM1O43490 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
PROM1O43490 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
PROM1O43490 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC16.79■□□□□ 0.28
PROM1O43490 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC16.79■□□□□ 0.28
PROM1O43490 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
PROM1O43490 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PROM1O43490 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC16.79■□□□□ 0.28
PROM1O43490 AC005336.2-201ENST00000593183 939 ntBASIC16.79■□□□□ 0.28
PROM1O43490 AC069148.1-201ENST00000608741 768 ntBASIC16.79■□□□□ 0.28
PROM1O43490 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
PROM1O43490 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC16.79■□□□□ 0.28
PROM1O43490 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
PROM1O43490 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
PROM1O43490 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PROM1O43490 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PROM1O43490 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
PROM1O43490 AL355312.1-201ENST00000407115 2176 ntBASIC16.79■□□□□ 0.28
PROM1O43490 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PROM1O43490 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PROM1O43490 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC16.79■□□□□ 0.28
PROM1O43490 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC16.79■□□□□ 0.28
PROM1O43490 LINC00896-202ENST00000609602 2128 ntBASIC16.79■□□□□ 0.28
PROM1O43490 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PROM1O43490 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
PROM1O43490 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
PROM1O43490 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PROM1O43490 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
PROM1O43490 AC125634.1-201ENST00000438758 1403 ntBASIC16.79■□□□□ 0.28
PROM1O43490 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC16.78■□□□□ 0.28
PROM1O43490 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
PROM1O43490 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
PROM1O43490 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PROM1O43490 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
PROM1O43490 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
PROM1O43490 REXO1L11P-201ENST00000620964 1927 ntBASIC16.78■□□□□ 0.28
PROM1O43490 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
PROM1O43490 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
PROM1O43490 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
PROM1O43490 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PROM1O43490 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PROM1O43490 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
PROM1O43490 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PROM1O43490 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PROM1O43490 PPIH-202ENST00000372549 327 ntTSL 3 BASIC16.78■□□□□ 0.28
PROM1O43490 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
PROM1O43490 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PROM1O43490 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PROM1O43490 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC16.78■□□□□ 0.28
PROM1O43490 TPSP2-201ENST00000561760 610 ntBASIC16.78■□□□□ 0.28
PROM1O43490 MPI-205ENST00000562606 1052 ntTSL 3 BASIC16.78■□□□□ 0.28
PROM1O43490 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
PROM1O43490 AP002414.4-201ENST00000589764 1148 ntBASIC16.78■□□□□ 0.28
PROM1O43490 AL138831.2-201ENST00000606564 490 ntBASIC16.78■□□□□ 0.28
PROM1O43490 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PROM1O43490 BCL10-202ENST00000620248 774 ntTSL 5 BASIC16.78■□□□□ 0.28
PROM1O43490 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC16.78■□□□□ 0.28
PROM1O43490 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
PROM1O43490 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PROM1O43490 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
PROM1O43490 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PROM1O43490 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
PROM1O43490 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC16.78■□□□□ 0.28
PROM1O43490 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
PROM1O43490 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC16.78■□□□□ 0.28
PROM1O43490 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC16.78■□□□□ 0.28
PROM1O43490 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
PROM1O43490 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PROM1O43490 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PROM1O43490 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
PROM1O43490 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC16.78■□□□□ 0.28
PROM1O43490 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PROM1O43490 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC16.78■□□□□ 0.28
PROM1O43490 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC16.78■□□□□ 0.28
PROM1O43490 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PROM1O43490 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
PROM1O43490 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
PROM1O43490 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
PROM1O43490 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC16.77■□□□□ 0.28
PROM1O43490 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
PROM1O43490 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PROM1O43490 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
PROM1O43490 BX276092.7-203ENST00000637198 1536 ntBASIC16.77■□□□□ 0.28
PROM1O43490 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
PROM1O43490 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms