Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
HOXA3O43365 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
HOXA3O43365 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
HOXA3O43365 AP002414.3-201ENST00000589352 1468 ntBASIC14.2□□□□□ -0.14
HOXA3O43365 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
HOXA3O43365 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HOXA3O43365 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC14.2□□□□□ -0.14
HOXA3O43365 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
HOXA3O43365 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
HOXA3O43365 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC14.2□□□□□ -0.14
HOXA3O43365 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HOXA3O43365 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
HOXA3O43365 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC14.2□□□□□ -0.14
HOXA3O43365 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
HOXA3O43365 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
HOXA3O43365 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HOXA3O43365 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
HOXA3O43365 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
HOXA3O43365 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HOXA3O43365 CENPM-204ENST00000402420 688 ntTSL 5 BASIC14.2□□□□□ -0.14
HOXA3O43365 AC096633.1-201ENST00000422446 749 ntBASIC14.2□□□□□ -0.14
HOXA3O43365 LAGE3P1-201ENST00000425356 484 ntBASIC14.2□□□□□ -0.14
HOXA3O43365 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
HOXA3O43365 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
HOXA3O43365 RNA5SP415-201ENST00000517246 115 ntBASIC14.2□□□□□ -0.14
HOXA3O43365 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC14.2□□□□□ -0.14
HOXA3O43365 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC14.2□□□□□ -0.14
HOXA3O43365 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC14.2□□□□□ -0.14
HOXA3O43365 AC140113.2-201ENST00000604370 208 ntBASIC14.2□□□□□ -0.14
HOXA3O43365 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC14.2□□□□□ -0.14
HOXA3O43365 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
HOXA3O43365 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
HOXA3O43365 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
HOXA3O43365 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
HOXA3O43365 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
HOXA3O43365 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC14.2□□□□□ -0.14
HOXA3O43365 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
HOXA3O43365 KRT8P47-201ENST00000604727 1398 ntBASIC14.2□□□□□ -0.14
HOXA3O43365 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HOXA3O43365 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC14.2□□□□□ -0.14
HOXA3O43365 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
HOXA3O43365 AC073592.3-201ENST00000625118 1834 ntBASIC14.2□□□□□ -0.14
HOXA3O43365 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC14.2□□□□□ -0.14
HOXA3O43365 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC14.2□□□□□ -0.14
HOXA3O43365 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
HOXA3O43365 CROCCP3-202ENST00000420820 1947 ntBASIC14.19□□□□□ -0.14
HOXA3O43365 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
HOXA3O43365 AC079776.2-201ENST00000641154 1609 ntBASIC14.19□□□□□ -0.14
HOXA3O43365 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
HOXA3O43365 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HOXA3O43365 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
HOXA3O43365 PMPCAP1-201ENST00000508114 1576 ntBASIC14.19□□□□□ -0.14
HOXA3O43365 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC14.19□□□□□ -0.14
HOXA3O43365 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HOXA3O43365 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HOXA3O43365 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC14.19□□□□□ -0.14
HOXA3O43365 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
HOXA3O43365 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
HOXA3O43365 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
HOXA3O43365 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HOXA3O43365 COX10-202ENST00000429152 875 ntTSL 2 BASIC14.19□□□□□ -0.14
HOXA3O43365 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC14.19□□□□□ -0.14
HOXA3O43365 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC14.19□□□□□ -0.14
HOXA3O43365 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
HOXA3O43365 AC122714.2-201ENST00000502787 707 ntBASIC14.19□□□□□ -0.14
HOXA3O43365 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC14.19□□□□□ -0.14
HOXA3O43365 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC14.19□□□□□ -0.14
HOXA3O43365 AC034105.1-201ENST00000563488 319 ntBASIC14.19□□□□□ -0.14
HOXA3O43365 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC14.19□□□□□ -0.14
HOXA3O43365 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC14.19□□□□□ -0.14
HOXA3O43365 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC14.19□□□□□ -0.14
HOXA3O43365 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HOXA3O43365 AL356488.2-201ENST00000602755 427 ntBASIC14.19□□□□□ -0.14
HOXA3O43365 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
HOXA3O43365 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC14.19□□□□□ -0.14
HOXA3O43365 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC14.19□□□□□ -0.14
HOXA3O43365 AL022326.1-202ENST00000641533 845 ntBASIC14.19□□□□□ -0.14
HOXA3O43365 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
HOXA3O43365 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HOXA3O43365 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC14.19□□□□□ -0.14
HOXA3O43365 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HOXA3O43365 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
HOXA3O43365 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC14.19□□□□□ -0.14
HOXA3O43365 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HOXA3O43365 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC14.19□□□□□ -0.14
HOXA3O43365 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HOXA3O43365 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
HOXA3O43365 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
HOXA3O43365 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
HOXA3O43365 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC14.18□□□□□ -0.14
HOXA3O43365 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
HOXA3O43365 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC14.18□□□□□ -0.14
HOXA3O43365 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
HOXA3O43365 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
HOXA3O43365 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
HOXA3O43365 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC14.18□□□□□ -0.14
HOXA3O43365 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
HOXA3O43365 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
HOXA3O43365 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC14.18□□□□□ -0.14
HOXA3O43365 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms