Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC30.32■■■□□ 2.44
CCDC88BA6NC98 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC30.32■■■□□ 2.44
CCDC88BA6NC98 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC30.32■■■□□ 2.44
CCDC88BA6NC98 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC30.32■■■□□ 2.44
CCDC88BA6NC98 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC30.32■■■□□ 2.44
CCDC88BA6NC98 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC30.32■■■□□ 2.44
CCDC88BA6NC98 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC30.32■■■□□ 2.44
CCDC88BA6NC98 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC30.32■■■□□ 2.44
CCDC88BA6NC98 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC30.32■■■□□ 2.44
CCDC88BA6NC98 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
CCDC88BA6NC98 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC30.32■■■□□ 2.44
CCDC88BA6NC98 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
CCDC88BA6NC98 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
CCDC88BA6NC98 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC30.31■■■□□ 2.44
CCDC88BA6NC98 SLBP-205ENST00000488267 987 ntTSL 2 BASIC30.31■■■□□ 2.44
CCDC88BA6NC98 AC015911.4-201ENST00000588022 1070 ntBASIC30.31■■■□□ 2.44
CCDC88BA6NC98 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC30.31■■■□□ 2.44
CCDC88BA6NC98 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC30.31■■■□□ 2.44
CCDC88BA6NC98 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
CCDC88BA6NC98 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
CCDC88BA6NC98 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
CCDC88BA6NC98 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC30.31■■■□□ 2.44
CCDC88BA6NC98 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC30.31■■■□□ 2.44
CCDC88BA6NC98 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC30.31■■■□□ 2.44
CCDC88BA6NC98 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC30.31■■■□□ 2.44
CCDC88BA6NC98 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC30.31■■■□□ 2.44
CCDC88BA6NC98 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
CCDC88BA6NC98 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC30.31■■■□□ 2.44
CCDC88BA6NC98 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC30.31■■■□□ 2.44
CCDC88BA6NC98 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC30.31■■■□□ 2.44
CCDC88BA6NC98 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC30.31■■■□□ 2.44
CCDC88BA6NC98 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
CCDC88BA6NC98 KRT18P55-202ENST00000578578 1546 ntBASIC30.3■■■□□ 2.44
CCDC88BA6NC98 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC30.3■■■□□ 2.44
CCDC88BA6NC98 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
CCDC88BA6NC98 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
CCDC88BA6NC98 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC30.3■■■□□ 2.44
CCDC88BA6NC98 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC30.3■■■□□ 2.44
CCDC88BA6NC98 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
CCDC88BA6NC98 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
CCDC88BA6NC98 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC30.3■■■□□ 2.44
CCDC88BA6NC98 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC30.3■■■□□ 2.44
CCDC88BA6NC98 AL513480.1-201ENST00000451731 511 ntBASIC30.3■■■□□ 2.44
CCDC88BA6NC98 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC30.3■■■□□ 2.44
CCDC88BA6NC98 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC30.3■■■□□ 2.44
CCDC88BA6NC98 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC30.3■■■□□ 2.44
CCDC88BA6NC98 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC30.3■■■□□ 2.44
CCDC88BA6NC98 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
CCDC88BA6NC98 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
CCDC88BA6NC98 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC30.3■■■□□ 2.44
CCDC88BA6NC98 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC30.3■■■□□ 2.44
CCDC88BA6NC98 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
CCDC88BA6NC98 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC30.29■■■□□ 2.44
CCDC88BA6NC98 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC30.29■■■□□ 2.44
CCDC88BA6NC98 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC30.29■■■□□ 2.44
CCDC88BA6NC98 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC30.29■■■□□ 2.44
CCDC88BA6NC98 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC30.29■■■□□ 2.44
CCDC88BA6NC98 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
CCDC88BA6NC98 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC30.29■■■□□ 2.44
CCDC88BA6NC98 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC30.29■■■□□ 2.44
CCDC88BA6NC98 KRT8P48-201ENST00000515599 1220 ntBASIC30.29■■■□□ 2.44
CCDC88BA6NC98 DAD1-205ENST00000543337 501 ntTSL 3 BASIC30.29■■■□□ 2.44
CCDC88BA6NC98 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC30.29■■■□□ 2.44
CCDC88BA6NC98 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC30.29■■■□□ 2.44
CCDC88BA6NC98 LINC00628-201ENST00000628516 1289 ntBASIC30.29■■■□□ 2.44
CCDC88BA6NC98 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC30.29■■■□□ 2.44
CCDC88BA6NC98 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC30.28■■■□□ 2.44
CCDC88BA6NC98 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC30.28■■■□□ 2.44
CCDC88BA6NC98 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
CCDC88BA6NC98 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC30.28■■■□□ 2.44
CCDC88BA6NC98 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
CCDC88BA6NC98 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC30.28■■■□□ 2.44
CCDC88BA6NC98 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC30.28■■■□□ 2.44
CCDC88BA6NC98 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC30.28■■■□□ 2.44
CCDC88BA6NC98 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC30.28■■■□□ 2.44
CCDC88BA6NC98 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC30.28■■■□□ 2.44
CCDC88BA6NC98 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC30.28■■■□□ 2.44
CCDC88BA6NC98 TK1-204ENST00000590430 683 ntTSL 3 BASIC30.28■■■□□ 2.44
CCDC88BA6NC98 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC30.28■■■□□ 2.44
CCDC88BA6NC98 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC30.28■■■□□ 2.44
CCDC88BA6NC98 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC30.28■■■□□ 2.44
CCDC88BA6NC98 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC30.28■■■□□ 2.44
CCDC88BA6NC98 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC30.28■■■□□ 2.44
CCDC88BA6NC98 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC30.28■■■□□ 2.44
CCDC88BA6NC98 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
CCDC88BA6NC98 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC30.27■■■□□ 2.44
CCDC88BA6NC98 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC30.27■■■□□ 2.44
CCDC88BA6NC98 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC30.27■■■□□ 2.44
CCDC88BA6NC98 NABP1-203ENST00000409510 843 ntTSL 5 BASIC30.27■■■□□ 2.44
CCDC88BA6NC98 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC30.27■■■□□ 2.44
CCDC88BA6NC98 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC30.27■■■□□ 2.44
CCDC88BA6NC98 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
CCDC88BA6NC98 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC30.27■■■□□ 2.44
CCDC88BA6NC98 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC30.27■■■□□ 2.44
CCDC88BA6NC98 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC30.27■■■□□ 2.44
CCDC88BA6NC98 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.44
CCDC88BA6NC98 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC30.26■■■□□ 2.44
CCDC88BA6NC98 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.44
CCDC88BA6NC98 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC30.26■■■□□ 2.44
CCDC88BA6NC98 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC30.26■■■□□ 2.44
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms