Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC28BQ9BUN5 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
CCDC28BQ9BUN5 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC28BQ9BUN5 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC28BQ9BUN5 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
CCDC28BQ9BUN5 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC28BQ9BUN5 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC28BQ9BUN5 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
CCDC28BQ9BUN5 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC17.24■□□□□ 0.35
CCDC28BQ9BUN5 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC17.24■□□□□ 0.35
CCDC28BQ9BUN5 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC17.24■□□□□ 0.35
CCDC28BQ9BUN5 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC17.24■□□□□ 0.35
CCDC28BQ9BUN5 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC28BQ9BUN5 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC17.24■□□□□ 0.35
CCDC28BQ9BUN5 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
CCDC28BQ9BUN5 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC28BQ9BUN5 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC28BQ9BUN5 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC28BQ9BUN5 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC28BQ9BUN5 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
CCDC28BQ9BUN5 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC17.24■□□□□ 0.35
CCDC28BQ9BUN5 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC28BQ9BUN5 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC28BQ9BUN5 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
CCDC28BQ9BUN5 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC28BQ9BUN5 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
CCDC28BQ9BUN5 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC28BQ9BUN5 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC28BQ9BUN5 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC28BQ9BUN5 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC28BQ9BUN5 AGGF1P2-201ENST00000426656 2106 ntBASIC17.23■□□□□ 0.35
CCDC28BQ9BUN5 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC28BQ9BUN5 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC28BQ9BUN5 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC28BQ9BUN5 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC17.23■□□□□ 0.35
CCDC28BQ9BUN5 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC28BQ9BUN5 ABHD17AP1-201ENST00000358206 933 ntBASIC17.23■□□□□ 0.35
CCDC28BQ9BUN5 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC28BQ9BUN5 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC28BQ9BUN5 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC17.23■□□□□ 0.35
CCDC28BQ9BUN5 CCR12P-201ENST00000446203 998 ntBASIC17.23■□□□□ 0.35
CCDC28BQ9BUN5 SEC1P-202ENST00000473944 940 ntBASIC17.23■□□□□ 0.35
CCDC28BQ9BUN5 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC28BQ9BUN5 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC17.23■□□□□ 0.35
CCDC28BQ9BUN5 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
CCDC28BQ9BUN5 IRX5-204ENST00000560154 879 ntTSL 5 BASIC17.23■□□□□ 0.35
CCDC28BQ9BUN5 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC17.23■□□□□ 0.35
CCDC28BQ9BUN5 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC17.23■□□□□ 0.35
CCDC28BQ9BUN5 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC28BQ9BUN5 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC28BQ9BUN5 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC28BQ9BUN5 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC17.23■□□□□ 0.35
CCDC28BQ9BUN5 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC17.23■□□□□ 0.35
CCDC28BQ9BUN5 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
CCDC28BQ9BUN5 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC28BQ9BUN5 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC28BQ9BUN5 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC28BQ9BUN5 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
CCDC28BQ9BUN5 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC28BQ9BUN5 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC28BQ9BUN5 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC28BQ9BUN5 OS9-205ENST00000413095 1660 ntTSL 2 BASIC17.23■□□□□ 0.35
CCDC28BQ9BUN5 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC28BQ9BUN5 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC28BQ9BUN5 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC17.23■□□□□ 0.35
CCDC28BQ9BUN5 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC28BQ9BUN5 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
CCDC28BQ9BUN5 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC28BQ9BUN5 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC17.22■□□□□ 0.35
CCDC28BQ9BUN5 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
CCDC28BQ9BUN5 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC28BQ9BUN5 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC28BQ9BUN5 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
CCDC28BQ9BUN5 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC17.22■□□□□ 0.35
CCDC28BQ9BUN5 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC28BQ9BUN5 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC17.22■□□□□ 0.35
CCDC28BQ9BUN5 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC28BQ9BUN5 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC28BQ9BUN5 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC28BQ9BUN5 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC28BQ9BUN5 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC28BQ9BUN5 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC17.22■□□□□ 0.35
CCDC28BQ9BUN5 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC28BQ9BUN5 HIST1H2APS4-201ENST00000362070 348 ntBASIC17.22■□□□□ 0.35
CCDC28BQ9BUN5 PRR31-201ENST00000371629 978 ntTSL 2 BASIC17.22■□□□□ 0.35
CCDC28BQ9BUN5 AL355355.2-201ENST00000442321 338 ntBASIC17.22■□□□□ 0.35
CCDC28BQ9BUN5 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC17.22■□□□□ 0.35
CCDC28BQ9BUN5 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC17.22■□□□□ 0.35
CCDC28BQ9BUN5 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC28BQ9BUN5 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC17.22■□□□□ 0.35
CCDC28BQ9BUN5 AP001412.1-201ENST00000608405 714 ntBASIC17.22■□□□□ 0.35
CCDC28BQ9BUN5 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC28BQ9BUN5 MED29-202ENST00000594368 1471 ntTSL 2 BASIC17.22■□□□□ 0.35
CCDC28BQ9BUN5 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC28BQ9BUN5 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC28BQ9BUN5 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC17.22■□□□□ 0.35
CCDC28BQ9BUN5 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC28BQ9BUN5 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
CCDC28BQ9BUN5 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC17.22■□□□□ 0.35
CCDC28BQ9BUN5 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC17.22■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms